BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924612
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 562 2e-159
> AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8203730-8206395 REVERSE LENGTH=2666
Length=2666
Score = 562 bits (304), Expect = 2e-159
Identities = 348/369 (94%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 53 GAGAGATGGGTCTTTGAAACTAC-TGTGTAAGAAAGAAGTTGTCTTGGTTAATTCCATTG 111
|||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 342 GAGAAATGGGTCTTTGAAACT-CTTGTGTAAGAAAGAAGTTGTCTTGGTTAATTCCATTG 400
Query 112 TTGAACAGCCTTTGCCTAGATTAAGCAG-TTTTTTCGATTCTGTGAAATCTGAATTGCTT 170
|||||||||||||| || | || || || |||||| |||||||||||||| |||||||||
Sbjct 401 TTGAACAGCCTTTGACTGGTTTGAGTAGGTTTTTT-GATTCTGTGAAATCGGAATTGCTT 459
Query 171 AGAACTGATTTGGTTAGTTTGGTTAAGGGACTAGATGATTCTGGGCATTGGGAAAGAGCT 230
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 460 AGAACTGATTTGGTTAGTTTGGTTAAGGGTCTAGATGATTCTGGGCATTGGGAAAGAGCT 519
Query 231 GtttttttGTTTGAATGGTTAGTTTTGTCTTCGAATTCTGGAGCTTTGAAGCTAGATCAT 290
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 520 GTTTTTTTGTTTGAATGGTTAGTTTTGTCTTCAAATTCTGGAGCTTTGAAGCTAGATCAT 579
Query 291 CAAGTTATCGAAATCTTAGTTAGGACTTTAGGTAGAGAATCTCAATACTCTGTTGCAGCT 350
||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 580 CAAGTTATCGAAATCTTTGTTAGGATTTTAGGTAGAGAATCTCAGTACTCTGTTGCAGCT 639
Query 351 AAGTTGCTCGACAAAATTCCTCTACAAGACTATATGCTCGATGTTCGTGCTTACACGACG 410
||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct 640 AAGTTGCTCGATAAAATTCCTCTACAAGAATATCTCCTCGATGTTCGGGCTTACACGACG 699
Query 411 ATCTTACAT 419
|||||||||
Sbjct 700 ATCTTACAT 708
Score = 556 bits (301), Expect = 9e-158
Identities = 348/370 (94%), Gaps = 6/370 (2%)
Strand=Plus/Plus
Query 420 AGATGGGTCCTTCCACCTACTTTGGTGACTTACAATGTGATTCTCGATGTTTTTGGGAAA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 AGATGGGTCCTT-CACCTACTTTGGTGACTTACAATGTGATTCTCGATGTTTTCGGGAAA 825
Query 480 ATGGGTCGATCTTGGAGGAAAATTCTAGGGGTTTTAGAGGAAATGAGAAGCAAAGGATTG 539
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 826 ATGGGTCGATCTTGGCGGAAAATTCTAGGGGTTTTAGATGAAATGAGAAGCAAAGGATTG 885
Query 540 AAGTTTGATGAGTTTACTTGTAGTACTGTGCTATCTGCTTGTGCAAGAGAAGGTTTGTTA 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 886 AAGTTTGATGAGTTTACTTGTAGTACTGTGCTCTCTGCTTGTGCAAGAGAAGGTTTGTTA 945
Query 600 AGAGAGGCGAAGGACTTTGTCACTGAACTTAAGTCATGCGGCTATGAACCTGGAACTGTA 659
|||||||| ||||| ||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 946 AGAGAGGCCAAGGAGTTTTTCGCTGAACTTAAGTCATGCGGCTATGAACCTGGTACTGTT 1005
Query 660 ACTTACAATGCTTTGTTGCAAGTTTTTGGCAAAGCAGGAGTTGTTTATACAGAAGCATTG 719
|| |||||||||||||||||||||||||| |||||||||||| | |||||||||| |||
Sbjct 1006 ACGTACAATGCTTTGTTGCAAGTTTTTGGTAAAGCAGGAGTT-T--ATACAGAAGCGTTG 1062
Query 720 AGTGTTTT-AAAGGAGATGGAGGAAAACAACTGCCCAGCAGATTCTGTGACATACAATGA 778
|||||||| |||| ||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1063 AGTGTTTTGAAAG-AGATGGAGGAAAATAGCTGCCCAGCAGATTCTGTGACATATAATGA 1121
Query 779 GCTTGTTGCT 788
||||||||||
Sbjct 1122 GCTTGTTGCT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5