BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924627

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family prote...   217    5e-56
  AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family prote...   104    4e-22


> AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979

 Score =  217 bits (117),  Expect = 5e-56
 Identities = 131/138 (95%), Gaps = 0/138 (0%)
 Strand=Plus/Plus

Query  5    TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA  64
            ||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  32   TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA  91

Query  65   TCGGACTTTGCAAATCTTGAGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG  124
            |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct  92   TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG  151

Query  125  CTTCACATGGACATTATG  142
            ||||||||||||||||||
Sbjct  152  CTTCACATGGACATTATG  169


 Score = 86.1 bits (46),  Expect = 2e-16
 Identities = 52/55 (95%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  177  GGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA  231
            ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct  174  GGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA  228


> AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056

 Score =  104 bits (56),  Expect = 4e-22
 Identities = 78/89 (88%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  32   GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGAGGCGGAG  91
            ||||| ||||| || || ||||||||| ||||||||||||| |||||||| | |||||||
Sbjct  55   GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG  114

Query  92   GCTAAGCGGATGATCGATTTAGGCGCCAA  120
            || || |||||||||||||| ||||||||
Sbjct  115  GCCAATCGGATGATCGATTTGGGCGCCAA  143



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5