BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924628
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family prote... 1098 0.0
AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family prote... 828 0.0
> AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979
Score = 1098 bits (594), Expect = 0.0
Identities = 672/710 (95%), Gaps = 4/710 (1%)
Strand=Plus/Plus
Query 5 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 64
||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91
Query 65 TCGGACTTTGCAAATCTTGCTGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 124
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151
Query 125 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 184
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211
Query 185 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTTACGAAC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271
Query 245 CCCATGGATTACGTGGATCAAATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 304
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331
Query 305 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 363
||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390
Query 364 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450
Query 424 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGTGGCCAGAA 483
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510
Query 484 GTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTATCCAACACTTGA 543
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570
Query 544 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 603
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630
Query 604 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 662
|||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689
Query 663 CCTTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCCTCCACTTAAGGGAGT 712
|| ||||| |||| |||||| |||| || || |||||||||||||| |||
Sbjct 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGT 739
> AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056
Score = 828 bits (448), Expect = 0.0
Identities = 601/676 (89%), Gaps = 6/676 (1%)
Strand=Plus/Plus
Query 32 GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGCTGCGGAG 91
||||| ||||| || || ||||||||| ||||||||||||| |||||||| || ||||||
Sbjct 55 GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG 114
Query 92 GCTAAGCGGATGATCGATTTAGGCGCCAATTGGCTTCACATGGACATTATGGACGGGCAT 151
|| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 115 GCCAATCGGATGATCGATTTGGGCGCCAACTGGCTTCACATGGATATTATGGACGGGCAT 174
Query 152 TTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAAGCACACAAAT 211
||||| || ||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 175 TTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAAGCACACTAAT 234
Query 212 GCATATCTTGATTGCCA-CTTAATGGTTACGAACCCCATGGATTACG-TGGATCAAATGG 269
||||||||||||||||| ||| ||||| ||||||||||||||||||| || | || ||||
Sbjct 235 GCATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGG 292
Query 270 CTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCAAAGAGAATTGGCAAG 329
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 293 CTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAAC 352
Query 330 AACTTGTGGAAAAGATTAAGTCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAA 389
||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 353 AACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAA 412
Query 390 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGTACAAATCCGGTTGAAATGGTTCTTG 449
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 413 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTG 472
Query 450 TGATGACTGTGGAGCCTGGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGG 509
|||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 473 TGATGACTGTAGAACCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGG 532
Query 510 TCCGGGCATTGAGG-AACAAGTATCCAACACTTGATATTGAGGTGGACGGTGGCTTAGGT 568
|||||||||||||| || || || ||||||||||||||| ||||||| || ||||||||
Sbjct 533 TCCGGGCATTGAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGC 591
Query 569 CCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCG 628
||||| || ||||| ||||||||||||| || ||||||||||| || || ||||||||
Sbjct 592 CCTTCAACGATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCA 651
Query 629 GTGTTTGGAGCTCCTGAGCCTGGGGATGTCATATCCTTTTTGTGGGCCAGTGTTAAGAAG 688
|||||||||||||| ||||| || |||||||| ||| || || || |||||||| ||||
Sbjct 652 GTGTTTGGAGCTCCGGAGCCAGGAGATGTCATCTCCCTTCTGAGGACCAGTGTTGAGAAA 711
Query 689 GCGCAGCCCTCCACTT 704
|| || ||| ||||||
Sbjct 712 GCCCAACCCACCACTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5