BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924633

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family prote...   324    5e-88
  AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family prote...   268    2e-71


> AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979

 Score =  324 bits (175),  Expect = 5e-88
 Identities = 196/206 (95%), Gaps = 2/206 (1%)
 Strand=Plus/Plus

Query  1    CATATCTTGATTGCCACTTAATGGTTACGAACCCCATGGATTACGTGGATCAAATGGCTA  60
            ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct  240  CATATCTTGATTGCCACTTAATGGTGACGAACCCCATGGATTATGTGGATCAGATGGCTA  299

Query  61   AAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGGCAAGAAC  120
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  300  AAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGGCAAGAAC  359

Query  121  TTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA  179
            |||| ||| || |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct  360  TTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA  418

Query  180  CCTGTTGAACAAGTCTATCCTCTGGT  205
            ||||||||||||||||||||||||||
Sbjct  419  CCTGTTGAACAAGTCTATCCTCTGGT  444


 Score =  272 bits (147),  Expect = 2e-72
 Identities = 163/171 (95%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  211  AGCCTAGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGA  270
            ||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  489  AGCCTGGATTTGGAGGCCAGAAGTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGA  548

Query  271  GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTGCACAATCG  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  549  GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCG  608

Query  331  ATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCGGTGT  381
            ||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  609  ATGCAGCAGCTGCAGCTGGAGCCAACTGTATCGTCGCAGGAAGTTCAGTGT  659


> AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056

 Score =  268 bits (145),  Expect = 2e-71
 Identities = 187/207 (90%), Gaps = 4/207 (2%)
 Strand=Plus/Plus

Query  1    CATATCTTGATTGCCA-CTTAATGGTTACGAACCCCATGGATTACG-TGGATCAAATGGC  58
            |||||||||||||||| ||| ||||| ||||||||||||||||||| || | || |||||
Sbjct  236  CATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGGC  293

Query  59   TAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGGCAAGA  118
            |||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||||||| |
Sbjct  294  TAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAACA  353

Query  119  ACTTGTGGAAAATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAAC  178
            |||||| || || |||||||||  ||||||||| ||||| ||||||||||||||||||||
Sbjct  354  ACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAAC  413

Query  179  ACCTGTTGAACAAGTCTATCCTCTGGT  205
            |||||||||||||||||||||||||||
Sbjct  414  ACCTGTTGAACAAGTCTATCCTCTGGT  440


 Score =  196 bits (106),  Expect = 1e-49
 Identities = 153/175 (87%), Gaps = 5/175 (3%)
 Strand=Plus/Plus

Query  209  GAAGCCTAGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGGTCCGGGCATT  268
            ||| ||| ||||||| ||||||||||| |||||  |||||||||||||||||||||||||
Sbjct  484  GAA-CCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGGTCCGGGCATT  542

Query  269  GAGG-AACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTGCA-CA  326
            |||| || || |||||||||||||||||| ||||||| |||||||||||||||| || | 
Sbjct  543  GAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGCCCTT-CAACG  600

Query  327  ATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCGGTGT  381
            |||||  ||||||||||||| || ||||||||||| || || |||||||| ||||
Sbjct  601  ATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCAGTGT  655



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5