BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924634
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26110.1 | Symbols: | Protein kinase superfamily protein | ... 961 0.0
AT1G08120.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 531 5e-150
> AT5G26110.1 | Symbols: | Protein kinase superfamily protein
| chr5:9117907-9119826 REVERSE LENGTH=1261
Length=1261
Score = 961 bits (520), Expect = 0.0
Identities = 586/619 (95%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 72 AGGGTGTTTGAGTCTACATTTACCGGAAGAAGATCCATTGTGAAAGAACGATTCTCGAAG 131
|||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||||||
Sbjct 312 AGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTCGAAG 371
Query 132 AAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGAGGCT 191
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 372 AAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGAAGCT 431
Query 192 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGTGGAT 251
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 432 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGTGGAT 491
Query 252 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATTTTC 311
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 492 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATATTTTC 551
Query 312 CTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCAGATT 371
||||| |||||| |||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 552 CTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCAGATT 611
Query 372 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTACATCA 431
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 612 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCACATCA 671
Query 432 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAGTGTC 491
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 672 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAGCGTC 731
Query 492 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTTACTC 551
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 732 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTC 791
Query 552 TCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAAGTCC 611
||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 792 TCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAAGTCC 851
Query 612 TCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGGAGAAAA 671
|| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 852 TCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAGAAAG 911
Query 672 CGGACTATGATTGGATGAG 690
|||||||||||||||||||
Sbjct 912 CGGACTATGATTGGATGAG 930
> AT1G08120.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Protein kinase superfamily protein (TAIR:AT5G26110.1);
Has 235 Blast hits to 235 proteins in 96 species: Archae
- 21; Bacteria - 0; Metazoa - 117; Fungi - 8; Plants - 47;
Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | chr1:2538615-2539661
FORWARD LENGTH=1047
Length=1047
Score = 531 bits (287), Expect = 5e-150
Identities = 413/468 (88%), Gaps = 32/468 (7%)
Strand=Plus/Plus
Query 72 AGGGTGTTTGAGTCTACATTTACCGGAAGAAGATCCATTGTGAAAGAACGATTCTCGAAG 131
||||| || |||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 139 AGGGTATTGGAGTCTACATTTTCTGGAAGAAGATCCATTGTGAAAGAACGTTTCTCGAAG 198
Query 132 AAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGAGGCT 191
|||||| | ||||||||||||||||| |||||||||||| | || | |||
Sbjct 199 AAATATCGCCACCCGATTTTGGATGCCAAACTCACACTC--A------AA--C----GCT 244
Query 192 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGTGGAT 251
||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 245 ---TGTATGACAAAGGCAAGAAAGCTAGGGGTTTGTACTCCAGTCATCTATGCTGTGGAT 301
Query 252 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATTTTC 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATTCTC 361
Query 312 CTTGACTTT-GGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCAGAT 370
||||||||| ||||| |||||| || |||||||||||||||||||||||||| |||||||
Sbjct 362 CTTGACTTTTGGGGCGAATGGGGTTGTTGAGGAACGGTTAGATGATGTTGCTACTCAGAT 421
Query 371 TGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTACATC 430
|||| | || || ||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 422 TGGGACGGCCATCGCTAAGCTCCATGATGGTGGCTTGGCTCACGGTGATTTGACCACATC 481
Query 431 AAATATGTTAGTCAGAAGTGGAACAAATCAG-CTG---------G-T---ACTAATCGAT 476
||||||||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct 482 AAATATGTTAGTCAGAAGTGGAACAAATCAGGCTGATTTAATCAGCTGGTACTAATCGAT 541
Query 477 TTTGGCTTGAGTGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGAT 524
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 542 TTTGGCTTGAGTGTCACATCGACCTTGCCTGAAGACAGAGCTGTTGAT 589
Score = 235 bits (127), Expect = 4e-61
Identities = 179/202 (89%), Gaps = 11/202 (5%)
Strand=Plus/Plus
Query 498 ACCTTGCCTGAAGACAAAGCTGTTGAT-T---TATAT---GTGCTTG-A-A-AGAGC-CT 546
||||||||||||||||||||||||||| | ||||| ||| || | | | ||| |
Sbjct 600 ACCTTGCCTGAAGACAAAGCTGTTGATCTAAATATATACCTTGCCTGAAGACAAAGCTGT 659
Query 547 TACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGA 606
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 TACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATACTGACAGCGTATAGGA 719
Query 607 AGTCCTCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGGA 666
| ||||| ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||
Sbjct 720 ACTCCTCAAAGCAATGGTCCGCCACATTTAACAAGCTCGCCCAAGTGCGGCAACGAGGGA 779
Query 667 GAAAACGGACTATGATTGGATG 688
|||| |||||||||||||||||
Sbjct 780 GAAAGCGGACTATGATTGGATG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5