BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924635
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63270.1 | Symbols: ATNAP10, NAP10 | non-intrinsic ABC prote... 1182 0.0
> AT1G63270.1 | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein
10 | chr1:23469664-23471237 REVERSE LENGTH=937
Length=937
Score = 1182 bits (640), Expect = 0.0
Identities = 687/710 (97%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288
Query 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348
Query 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408
Query 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468
Query 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300
|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527
Query 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587
Query 361 ATAAAATCGGCAAAGCTCAACCCGCATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647
Query 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 480
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707
Query 481 CTATCGACAGACCGATTTGGCTATTGGATGAACCATCCGTTGCTTTGGATGATGAAGGAG 540
||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767
Query 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827
Query 601 CAACTCATCTTCCTATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660
| ||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887
Query 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35465307782
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5