BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924636
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23... 1458 0.0
> AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23469204
REVERSE LENGTH=1419
Length=1419
Score = 1458 bits (789), Expect = 0.0
Identities = 836/859 (97%), Gaps = 2/859 (0%)
Strand=Plus/Plus
Query 1 TCACTGACCCATTTGTTTTCT-TGCAATCTTTTGTAGAACCCTGAACCAAAGTTTGCATC 59
||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||
Sbjct 131 TCACTGACCCATTTGTTTTCTCT-CAATCTTTTGCAGAACCCTGAACCAAATTTTGCATC 189
Query 60 TCTCTCTTTAAATTTTGTGTCTTTCTTTAATTCTTTGGAGGGGTTTTTCAAAAGAAAGAA 119
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 190 TTTCTCTTTGAATTTTGTGTCTTTCTTTAATTCTTTGGAGGGGTTTTTCAAAAGCAACAA 249
Query 120 TCTTGAAAAAATGGGTATGGGCACAAGCACTTTCGTTATCAGATGGGTCAATCTTCTTAC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCTTGAAAAAATGGGTATGGGCACAAGCACTTTCGTTATCAGATGGGTCAATCTTCTTAC 309
Query 180 AATGCTATTGGCTGTGGCAGTGATAATATTTGGGGTGTGGATGAGTACACACAATGATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AATGCTATTGGCTGTGGCAGTGATAATATTTGGGGTGTGGATGAGTACACACAATGATGG 369
Query 240 TTGCAGAAGGTCACTTACATTTCCAGTCATAGCTCTTGGTGGTTTCATCTTCTTGATATC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 370 TTGCAGAAGGTCACTTACATTTCCAGTTATAGCTCTTGGTGGTTTCATCTTCTTGATATC 429
Query 300 CATAATCGGATTTCTTGGCGCGTGCAAGAGAAGTGTGGCGCTTCTTTGGATTTATCTTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CATAATCGGATTTCTTGGCGCGTGCAAGAGAAGTGTGGCGCTTCTTTGGATTTATCTTGC 489
Query 360 TGTCCTCCTGATCGTTTTGATCGCGATTCTTGTCTTTACCGTACTAGCGTTCATTGTAAC 419
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 CGTGCTCCTGATCGTTTTGATCGCGATTCTTGTCTTTACCGTACTGGCGTTCATTGTAAC 549
Query 420 AAACAATGGTTCTGGCCATACTAACCCTGGTTTAAGGTACAAAGAGTATAAGCTGAATGA 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 550 AAACAATGGTTCTGGCCATACTAACCCTGGTTTAAGGTACAAGGAGTATAAGCTGAATGA 609
Query 480 TTACAGCTCATGGTTTCTAAAACAGCTCAACAACACCAGTAACTGGATAAGACTAAAGAG 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 TTACAGCTCATGGTTTCTAAAACAGCTTAACAACACCAGTAACTGGATAAGACTAAAGAG 669
Query 540 TTGTCTTGTTAAATCCGAGCAATGTAGGAAGCTTTCCAAGAAATACAAGACCATCAAACA 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 670 TTGTCTTGTTAAATCCGAGCAATGTCGGAAGCTTTCCAAGAAATACAAGACCATCAAACA 729
Query 600 ATTAAAATCCGCAGAATTAACCCCGATAGAAGCTGGATGTTGTCGACCACCATCTGAGTG 659
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTTGAAATCCGCAGAATTAACCCCGATAGAAGCTGGATGTTGTCGACCACCATCTGAGTG 789
Query 660 TGGTTATCCTGCGGTGAATGCTTCTTACTATGACTTGAGCTTTCATTCGATAAGTTCTAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TGGTTATCCTGCGGTGAATGCTTCTTACTATGACTTGAGCTTTCATTCGATAAGTTCTAA 849
Query 720 CAAAGATTGTAAGCTCTACAAGAATTTGAGGACCATCAAGTGCTACAATTGTGATTCTTG 779
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 850 CAAAGATTGTAAGCTTTACAAGAATTTGAGGACTATCAAGTGCTACAACTGTGATTCTTG 909
Query 780 CAAAGCTGGAGTAGCTCAGTACATGAAAACCGAGTGGCGACTTGTTGCGATCTTCAATGT 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CAAAGCTGGAGTTGCTCAGTACATGAAAACCGAGTGGCGACTTGTTGCGATCTTCAATGT 969
Query 840 GGTTCTGTTTGTTGTCTTG 858
||| |||||||||||||||
Sbjct 970 GGTCCTGTTTGTTGTCTTG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5