BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924638
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63245.1 | Symbols: CLE14 | CLAVATA3/ESR-RELATED 14 | chr1:2... 350 5e-96
> AT1G63245.1 | Symbols: CLE14 | CLAVATA3/ESR-RELATED 14 | chr1:23460529-23460771
REVERSE LENGTH=243
Length=243
Score = 350 bits (189), Expect = 5e-96
Identities = 227/245 (93%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 22 ATGAGAA-TTTGGAGCCAAAGATTATCGTTTCTAATCGTCATGATCTCCATTTTCTCCGG 80
|||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1 ATGA-AAGTTTGGAGCCAAAGATTATCGTTTCTAATCGTCATGATCTTCATTTTGGCCGG 59
Query 81 GCTCCATTTCTCCTTG-GCCAGCCGCAAGCTCCCTAGTATGACCACGACGGAGGAGTTCC 139
||| |||| ||| || ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 60 GCTTCATTCCTC-TTCCGCCGGCCGCAAGCTCCCTAGTATGACGACGACGGAGGAGTTCC 118
Query 140 AGCGATTAAGTTTTGACGGCAAGAGAATGTTATCGGAAGTGACCGCCGGCGAGAAGTATG 199
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 119 AGCGATTAAGTTTTGACGGCAAGAGAATATTATCGGAAGTGACCGCCGACAAGAAGTATG 178
Query 200 ATCGGATCTACGGAGCTTCCGCCAGATTAGTTCCCGAAGGTCCTAACCCGCTTCACAACA 259
||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 179 ATCGGATCTACGGAGCTTCTGCTAGATTAGTTCCCAAAGGTCCTAACCCGCTTCACAACA 238
Query 260 AATGA 264
|||||
Sbjct 239 AATGA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13069614740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5