BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924661
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63190.1 | Symbols: | Cystatin/monellin superfamily protein... 713 0.0
> AT1G63190.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:23431835-23433002 FORWARD LENGTH=678
Length=678
Score = 713 bits (386), Expect = 0.0
Identities = 486/532 (91%), Gaps = 16/532 (3%)
Strand=Plus/Plus
Query 9 AGGCTGGATTAAATGGCTCGAACCAGGGTTTCTGCAATTCTGCTGTGGAAACCTGAGGAT 68
||||||||| ||||||||||||||| || | | || ||||||||||||||||||||
Sbjct 15 AGGCTGGATCAAATGGCTCGAACCA--GTGT-T----TT-TGCTGTGGAAACCTGAGGAT 66
Query 69 CCTGGCTATGAGAGACCTGCGTATAGGGATTGGACCGAGGAGGAAGATGAGCCTAAGTAC 128
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 67 CCTGGCTATGAGAGACCAGCGTATAGGGATTGGACCAAAGAGGAAGATGAGCCTAAGTAC 126
Query 129 TCACCAGAGGAAGAACTTGCCTTACTCGACAAACAAATCCTTGCGAGCGATGGGTTTGAT 188
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 127 TCACCAGAGAAAGAACTTGCCTTACTCGACAAACAAATCCTTGCAAGCGATGGTTTTGAT 186
Query 189 ATCGACTACACACAGTTCCGGTGTGTCTTCAACTACCATCTTGCTTATCTCGACTCAGAT 248
||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||| ||| ||
Sbjct 187 ATCGACTTCACACACTTCCGTTGTGTATTCAATTACCATCTTGCTTATCTCGATTCACAT 246
Query 249 GAATTCGCTGAGGAGCCAACAGAAACCACTAGGGATTTACTCGAGAGGCTCTCTAGGAAG 308
||||||| ||| ||| | |||||||||| || |||||||||||||||||||||||||||
Sbjct 247 GAATTCGTTGATGAG-C--CAGAAACCACAAGAGATTTACTCGAGAGGCTCTCTAGGAAG 303
Query 309 GCCCTTGATGACTACAATCAAGAATCTAGAACAAAATTTGAGTTTGTCAAGGTTGTGAAA 368
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 304 GCCCTTGATGACTACAATCAAGAATCAAGAACACAATTTGAGTTTGTCAAGGTTGTGAAA 363
Query 369 GCAAACTTTCACTGGTGTTGTGC-ATATATGTTTCTCATAACATTTGAAGTTGTTGATCC 427
||||||||||||| |||||||| || ||||||||||||||| || ||||||||||| ||
Sbjct 364 GCAAACTTTCACTTTTGTTGTGCGAT-TATGTTTCTCATAACCTTCGAAGTTGTTGACCC 422
Query 428 TTATGATAACTTGATAAAACTCTTCCAAACAAGGGTTCGCCACGA-GACAGATATCGTGA 486
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct 423 TTATGATAACTTGATCAAACTCTTCCAAACAAGGGTTCGCCACGCTGA-AGATATCGTGA 481
Query 487 CTGAGTATGTCTTTTGCAGGC-GAAACCCAATCAAGAAGTGGAATGCATTGG 537
||||||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 482 CTGAGTACGTCTTTTGCAGGCCGAAACCCAATCAAGGAGTGGAATGCATTGG 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5