BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924663
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63170.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 1803 0.0
AT1G12760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 562 3e-159
> AT1G63170.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:23425352-23427311 FORWARD LENGTH=1606
Length=1606
Score = 1803 bits (976), Expect = 0.0
Identities = 1109/1169 (95%), Gaps = 25/1169 (2%)
Strand=Plus/Plus
Query 1 ACTTTGAAGAGAGAGAG-AAAATGTCAACAGAGACGACGACGGAAGCAACGCCTTTGATT 59
|||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 202 ACTTTGAAAAGAGAAAGCAAAATGTCAAGAGAGACGACGACGGAAGCAACGCCTTTGATT 261
Query 60 TTAACCGACGGCGGAGGAGGAGGGAGATCGGTGAGGAGACAAGGGTTAAGAGAAGCGGCG 119
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 262 TTAACCGACGGAGGAGGAGGAAGGAGATCGGTGAGAAGACAAGGGTTAAGAGAAGCGGCG 321
Query 120 AGGTTACTAAGACATGCAAGTAGCGGAAGAATGATGATGAGAGAACCATCGATGCTTGTT 179
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 322 AGGTTACTAAGACATGCAAGTAGCGGGAGAATGATGATGAGAGAGCCATCGATGCTTGTT 381
Query 180 CGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAAAGCGATTGGGCTTATTCGAAACCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAAAGCGATTGGGCTTATTCGAAACCT 441
Query 240 GTAGTGGTTTTGGATTTCGTTTGGAATCTTGCTTTTGTCGCCGTTGCTACAGCTGTTTTG 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 442 GTAGTGGTTTTGGATTTCGTTTGGAATCTTGCTTTTGTCGTTGTTGCTACAGCTGTTTTG 501
Query 300 GTACTTAGCAGCGATGAGAATCCGAATATGCCTCTTAGGGTTTGGATTATTGGGTATGGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GTACTTAGCAGCGATGAGAATCCGAATATGCCTCTTAGGGTTTGGATTATTGGGTATGGG 561
Query 360 TTGCAATGTATGATGCATATGGTTTGTGTTTGTGTTGAGTATCGTAGGAGGAATAGTAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TTGCAATGTATGATGCATATGGTTTGTGTTTGTGTTGAGTATCGTAGGAGGAATAGTAGA 621
Query 420 AGAAGAAGAGATATGAGTCCAAGATCTAG-----------------C-TCTTCTTCTATG 461
|||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 622 AGAAGAAGAGATTTGAGTCCAAGATCTAGCTCTTCTTCTTCTTCTTCTTCTTCTTCTATG 681
Query 462 GAGGAAGAAGATGGTTTGGGTTTGAGTAGAAACTCAGATGATCGTTACTTGGAGCTAGGT 521
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 682 GATGAAGAAGAAGGTTTGGGTTTGAGTAGAAACTCAGATGAACGTTACTTGGAGCTAGGT 741
Query 522 CAATTAGAGAATGAAAACAACAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATC 581
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAATTAGAGAATGAAAACAATAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATC 801
Query 582 TCATTTATATGGTGGGTTATTGGATTCTACTGGGTATCTTCTGGTGGCCAAGAGTTAGCG 641
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 802 TCATTTATATGGTGGGTTATTGGATTTTATTGGGTATCTTCTGGTGGTCAAGAGTTAGCA 861
Query 642 CAAGGATCCCCTCAGCTTTATTGGTTATGTATAGTCTTTCTTGGTTTCGATGTGTTCTTT 701
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 862 CAAGGATCCCCACAGCTTTATTGGTTGTGTATAGTCTTTCTTGGTTTCGATGTGTTCTTT 921
Query 702 GTGGTTTTCTGCGTTGCATTGGCTTGTGTTATTGGCATTGCTGTTTGCTGCTGCTTGCCT 761
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 922 GTTGTTTTCTGCGTTGCATTGGCTTGTGTTATCGGCATTGCTGTTTGCTGCTGCTTGCCT 981
Query 762 TGCATCATTGCAGTTCTATACGCCGTTGCAGAACAGGAAGGAGCTTCGAAAGAAGACATT 821
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 982 TGCATCATTGCAGTTCTATACGCCGTAGCAGAACAGGAAGGAGCTTCGAAAGAAGACATT 1041
Query 822 GACCAACTTACTAAATTCAAATTCCGAAAGGTTGGTGATTCTGTGAAACACACTGTTGAT 881
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1042 GACCAACTTACTAAATTCAAATTCCGAAAGGTTGGTGATACTATGAAACACACTGTTGAT 1101
Query 882 GAAGAACAAGGA---G-A--TTCAGGAGGAGTGATGACTGAATGTGGTACAGATTCACCC 935
|||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1102 GAAGAACAAGGACAAGGAGATTCTGGAGGAGTGATGACTGAATGTGGTACAGATTCACCC 1161
Query 936 GTCGAACATACTCTTCCTCATGAGGATGCAGAATGCTGCATTTGTCTTTCGGCGTATGAA 995
|| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1162 GTTGAACATGCTCTTCCTCATGAGGATGCAGAATGCTGCATTTGTCTTTCCGCTTATGAA 1221
Query 996 GACGAGACAGAGCTTAGAGAACTTCCTTGTGGCCACCATTTCCATTGTGGTTGTGTGGAC 1055
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1222 GACGAGACAGAGCTAAGAGAACTTCCTTGTGGCCACCATTTCCATTGCGGTTGTGTGGAT 1281
Query 1056 AAATGGCTTTACATAAACGCTACTTGTCCCCTCTGCAAATACAACATCCTCAAGAGTAGC 1115
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 AAATGGCTTTACATAAATGCTACTTGTCCCCTCTGCAAATACAACATCCTCAAGAGTAGC 1341
Query 1116 AACTACGAAGAAGGCGAGGAAGTCTAGAA 1144
|||||||||||||||||||||||||||||
Sbjct 1342 AACTACGAAGAAGGCGAGGAAGTCTAGAA 1370
> AT1G12760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:4348498-4350867 FORWARD LENGTH=1812
Length=1812
Score = 562 bits (304), Expect = 3e-159
Identities = 574/703 (82%), Gaps = 24/703 (3%)
Strand=Plus/Plus
Query 450 TCTTCTT-CTATGGAGGAAGAAGATGGTTTGGGTTTGAGTAGAAACTCAGATGAT-C-GT 506
||||||| || ||||||||| | | | |||||||| || || || |||| || | | |
Sbjct 771 TCTTCTTCCT-TGGAGGAAG-A-A-GCTTTGGGTTCCAGGAGGAATTCAGGTG-TGCAG- 824
Query 507 TACTTGGAGCTAGGTCAATTAGAGAATGAAAACAACAGTTTTGCTAAGCATCTAGAATCT 566
||||| ||| || || || || | |||| || |||| ||||||||||||| ||||||
Sbjct 825 GACTTGTCGCTTGGCCACTTGGATACCGAAAGCAGCAGTGTTGCTAAGCATCTGGAATCT 884
Query 567 GCAAATACGATGATCTCATTTATATGGTGGGTTATTGGATTCTACTGGGTATCTTCTGGT 626
|| ||||||||| | || |||||||||||| | ||||||||||||||||||||| |||||
Sbjct 885 GCCAATACGATGTTTTCTTTTATATGGTGGATCATTGGATTCTACTGGGTATCTGCTGGT 944
Query 627 GGCCAAGAGTTAGCGCAAGGATCCCCTCAGCTTTATTGGTTATGTATAGTCTTTCTTGGT 686
||||||||||| || |||| |||||||| | |||| ||| | | ||| ||||||||||||
Sbjct 945 GGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGCTGTCTATTGTCTTTCTTGGT 1004
Query 687 TTCGATGTGTTCTTTGTGGTTTTCTGCGTTGCATTGGCTTGTGTTATTGGCATTGCTGTT 746
||||||||||||||||| || ||||| ||||| ||||| || |||||||| ||||| |||
Sbjct 1005 TTCGATGTGTTCTTTGTTGTCTTCTGTGTTGCGTTGGCCTGCGTTATTGGAATTGCGGTT 1064
Query 747 TGCTGCTGCTTGCCTTGCATCATTGCAGTTCTATACGCCGTTGCAGAACAGGAAGGAGCT 806
||||| ||| |||| ||||||||||||||| | ||||| ||||| || |||||||| |||
Sbjct 1065 TGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTGTTGCTGATCAGGAAGGGGCT 1124
Query 807 TCGAAAGAAGACATTGACCAACTTACTAAATTCAAATTCCG-AAAGGTTGGTGATTCTGT 865
|| |||||||||||||| || || || |||||||| || || ||| | |||||| |
Sbjct 1125 TCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTCGCAAA-CTAGGTGATGCCAA 1183
Query 866 GAAACACACTGTTGATGAAGAACAAGGAGA-TTCAGGA-GGAGTGATGACTGAATGTGGT 923
||||||||| |||||||| |||||| | | | || ||| | |||||||| ||||||
Sbjct 1184 CAAACACACTAATGATGAAGCCCAAGGA-ACTAC-CGAGGGAATAATGACTGAGTGTGGT 1241
Query 924 ACAGATTCACCCGTCGAACATACTCTTCCT-CATGAGGATGCAGAATGCTGCATTTGTCT 982
|||||||||||| | |||||||||||| | || || ||||||||||| ||||| |||||
Sbjct 1242 ACAGATTCACCCATTGAACATACTCTT-TTGCAAGAAGATGCAGAATGTTGCATCTGTCT 1300
Query 983 TTCGGCGTATGAAGAC-GAGACAGAGCTTAGAGAACTTCCTTGTGGCCACCATTTCCATT 1041
|| || ||||||||| || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 1301 CTCTGCATATGAAGACGGA-ACAGAGCTAAGGGAACTACCTTGTGGACACCATTTCCACT 1359
Query 1042 GTGGTTGTGTGGACAAATGGCTTTACATAAACGCTACTTGTCCC-CTCTGCAAATACAAC 1100
|| || || ||||||||||| ||||| ||||| ||||| ||| |||||||||||||||
Sbjct 1360 GTTCATGCGTAGACAAATGGCTATACATCAACGCGACTTG-CCCACTCTGCAAATACAAC 1418
Query 1101 ATCCTCAAGAGTAGCAACTACGAAGAAGGCGAGGAAGTCTAGA 1143
||||||||||||||||||| | || | |||||||||||||
Sbjct 1419 ATCCTCAAGAGTAGCAACTT-G--GATCGAGAGGAAGTCTAGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5