BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924666
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63140.2 | Symbols: | O-methyltransferase family protein | ... 1742 0.0
AT1G62900.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 941 0.0
> AT1G63140.2 | Symbols: | O-methyltransferase family protein
| chr1:23417494-23419002 FORWARD LENGTH=1296
Length=1296
Score = 1742 bits (943), Expect = 0.0
Identities = 1110/1191 (93%), Gaps = 9/1191 (1%)
Strand=Plus/Plus
Query 1 TTTTTCAACC-AACAATAACAATGGCGAACCATATTCAACATTCCTTGACCACCATTCCT 59
|||| ||||| ||||| |||||||| ||||||| ||||||||||||| |||| |||||||
Sbjct 3 TTTTCCAACCAAACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCT 62
Query 60 AAACCGGATCTAATCAAAGAAGAACAACGTTTTGACGAAGATACGGTGAGTTTGCAAGCG 119
||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 63 AAACCGGATCTAATCAAAGAAGAACAACGTTATCACGAAGATACGGTGAGCTTGCAAGCG 122
Query 120 GAGAGGATCTTGCATGCCACGGCCTTCCCCATGGTTCTCAAAACCGCTTTGGAGCTTGGC 179
|||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 123 GAGAGGATTTTGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGC 182
Query 180 ATTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATAGCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 183 GTTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCT 242
Query 240 TTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCGGTATTACTGGACCGGATGCTG 299
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 243 CTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTA 302
Query 300 GTTTTACTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGAGAACATT 359
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 303 GTTTTGTTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATT 362
Query 360 GGAAGTAGAAAGACTGAGAGGGTCTATGCATCTGAACCGGTTTGCAAGTTTTTCTTGAAC 419
|||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 363 GGAAGTAGAAAGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAAC 422
Query 420 CGCGGAGATGGCTCGGGGTCTCTCGCCACTTTGTTCATGGTATTCCAAAGCGAAGGCTGT 479
||||||||||||| ||| |||||||||||||||||||||||| ||||| | |||| ||||
Sbjct 423 CGCGGAGATGGCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGT 482
Query 480 ATGAAGACTTGGGCACATCTCAAAGATGTGATATTAGAAGGAAAGGATGCATTCAGCTTT 539
|||||| |||||| |||||||||||| |||||||||||||||| |||||||||| || |
Sbjct 483 ATGAAGCCTTGGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCT 542
Query 540 GCTCATGGCATGAGGATTTTCGAA-TACATTGGTTCGAACGAACAACTCGCTGAGATGTT 598
||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| |||||
Sbjct 543 GCTCATGGCATGAGGTTTTTCGAACT-CATTGGTTCGAACGAACAATTCGCTGAAATGTT 601
Query 599 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAAAAGTTTACAA 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 602 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAA 661
Query 659 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACCGTCATAGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 662 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGG 721
Query 719 TCTAGTGACTTCCAAGTATCCTCATATTACAGGCATCAATTTCGATCTAGCATCGATTTT 778
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 722 TCAAGTGACTTCCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTT 781
Query 779 AGTCCATGCTCATCTTTA-TAAAGGAGTGGAGCATGTTTCGGGAGATATGTTTAAAGAAA 837
|| |||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 782 AGCCCATGCTCCT-TTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAA 840
Query 838 TTCCAAAAGGAGATGCCATCTTCATGAAGTGGATTCTACATGATTGGACTGACGAAGATT 897
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 841 TTCCAAAAGGAGATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATT 900
Query 898 GTGTAAAGATTCTAAAAAATTGTTGGAAAAGTCTATCC-GAGAAAGGAAAAGTGATAATA 956
|||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 901 GTGTAAAGATCCTAAAAAATTATTGGAAAAGTCT-TCCCGAGAAAGGAAAAGTGATAATA 959
Query 957 GTCGAGATGGTTACGCCGGAGGAACCAAAGATCAACGACGTTTCTTCTAACGTTGTGTTA 1016
|||||| |||||||||| |||||||||||||| |||||| ||||||||||| |||||||
Sbjct 960 GTCGAGGTGGTTACGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTC 1019
Query 1017 GCCATGGACATGTTGATGTTAACAC-AATGCTCAGGTGGTAAGGAGAGGACTCTTTCACA 1075
| ||||||||| |||||||| || || |||||||||||||||||||| ||||||| ||
Sbjct 1020 GGTATGGACATGCTGATGTTAGCAGTAA-GCTCAGGTGGTAAGGAGAGGTCTCTTTCCCA 1078
Query 1076 ATTTGAGACTCTAGCCTCTGATTCTGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1135
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTCGAGACTCTAGCCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1138
Query 1136 CTCATATAGCGTTATCGAATTACACAAATAGGTTCAACATTTTACCAACAA 1186
||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 1139 CTCATATAGTGTTATCGAATTACACAAATAGGCTCGACATTTTACCAACAA 1189
> AT1G62900.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:23297720-23298682
FORWARD LENGTH=836
Length=836
Score = 941 bits (509), Expect = 0.0
Identities = 599/642 (93%), Gaps = 8/642 (1%)
Strand=Plus/Plus
Query 549 ATGAGGATTTTCGAA-TACATTGGTTCGAACGAACAACTCGCTGAGATGTTTAACCGGGC 607
|||||| |||||||| | ||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 73 ATGAGGGTTTTCGAACT-CATTGGTTCGAACGAACAATTCGCTGAAATGTTTAACCGGAC 131
Query 608 AATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAAAAGTTTACAAAGGATTCGA 667
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 132 AATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGA 191
Query 668 AGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACCGTCATAGGTCTAGTGAC 727
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 192 AGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGGTCAAGTGAC 251
Query 728 TTCCAAGTATCCTCATATTACAGGCATCAATTTCGATCTAGCATCGATTTTAGTCCATGC 787
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 252 TTCCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTTAGCCCATGC 311
Query 788 TCATCTTTA-TAAAGGAGTGGAGCATGTTTCGGGAGATATGTTTAAAGAAATTCCAAAAG 846
|| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 312 TCCT-TTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAG 370
Query 847 GAGATGCCATCTTCATGAAGTGGATTCTACATGATTGGACTGACGAAGATTGTGTAAAGA 906
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 GAGATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATTGTGTAAAGA 430
Query 907 TTCTAAAAAATTGTTGGAAAAGTCTATCC-GAGAAAGGAAAAGTGATAATAGTCGAGATG 965
| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 431 TCCTAAAAAATTATTGGAAAAGTCT-TCCCGAGAAAGGAAAAGTGATAATAGTCGAGGTG 489
Query 966 GTTACGCCGGAGGAACCAAAGATCAACGACGTTTCTTCTAACGTTGTGTTAGCCATGGAC 1025
|||||||| |||||||||||||| |||||| ||||||||||| ||||||| | ||||||
Sbjct 490 GTTACGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTCGGTATGGAC 549
Query 1026 ATGTTGATGTTAACAC-AATGCTCAGGTGGTAAGGAGAGGACTCTTTCACAATTTGAGAC 1084
||| |||||||| || || |||||||||||||||||||| ||||||| ||||| |||||
Sbjct 550 ATGCTGATGTTAGCAGTAA-GCTCAGGTGGTAAGGAGAGGTCTCTTTCCCAATTCGAGAC 608
Query 1085 TCTAGCCTCTGATTCTGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTTCTCATATAG 1144
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TCTAGCCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTTCTCATATAG 668
Query 1145 CGTTATCGAATTACACAAATAGGTTCAACATTTTACCAACAA 1186
|||||||||||||||||||||| || |||||||||||||||
Sbjct 669 TGTTATCGAATTACACAAATAGGCTCGACATTTTACCAACAA 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5