BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924667
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23... 1618 0.0
> AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23408876-23410815
REVERSE LENGTH=1222
Length=1222
Score = 1618 bits (876), Expect = 0.0
Identities = 954/993 (96%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 1 AGATagagagaaacagagtaatggctaacagagatgtggagagaggagggaagaaaaaca 60
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 71 AGAGAGAGAGAAACAGAGTAATGGCGAACAGAGATGTGGAGAGAGTAGGGAAGAAAAACA 130
Query 61 gaggagCTAATAACAATTATTTCTACGATGAGTCTTCCGGTGAAACTCATTGGACTTCGT 120
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 131 GAGGAGCTAATAACAATTATTTCTACGAGGAGTCTTCTGGTGAAACTCATTGGACTTCAT 190
Query 121 GGCTGATTCCGGCTATTGTAGTGGCGAATCTCGCTGTCTTTATTGCTGTTATGTTCGTTA 180
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 191 GGCTGATTCCGGCGATTGTAGTGGCAAATCTCGCTGTCTTTATCGCTGTTATGTTCGTTA 250
Query 181 ATGATTGTCCTAAGAAAATCACCGGAGCTAACAAAGAGTGTGTTGCTAGATTCCTTGGAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 251 ATGATTGTCCTAAGAAAATCACCGGACCTAACAAAGAGTGTGTTGCTAGATTCCTCGGAA 310
Query 241 GATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTTCTTCTACATTGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 311 GATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTTCTTCAACATTGG 370
Query 301 AGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATGAACATCAAGGATGGAGACTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATGAACATCAAGGATGGAGACTTC 430
Query 361 TCTCTTGTATGTGGCTTCACGCTGGTATCATTCATCTTCTTACAAATATGTTGAGTTTGA 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 431 TCTCTTGTATGTGGCTTCACGCTGGTATCATTCATCTTCTTACAAACATGTTGAGTTTGA 490
Query 421 TCTTCATCGGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGCTGATCTACT 480
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 491 TCTTCATTGGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGTTGATATACT 550
Query 481 TAATATCTGGTCTCGGTGGAAGCATACTTTCGTCCCTTTTCCTTCAAGAAAGTATTTCTG 540
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 551 TAATATCGGGTCTCGGTGGAAGCATACTTTCGTCGCTTTTCCTTCAAGAAAGTATCTCTG 610
Query 541 TTGGTGCTTCGGGTGCTCTCTTCGGACTTCTTGGAGCAATGTTATCTGAACTTCTCACCA 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 611 TTGGTGCTTCGGGTGCTCTCTTTGGACTTCTTGGAGCAATGTTATCTGAACTTCTTACCA 670
Query 601 ATTGGACTATCTACGCCAACAAGGCGGCTGCTCTGATCACGCTTCTGTTCATCATCGCAA 660
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 671 ATTGGACTATCTATGCCAACAAGGCGGCTGCTCTGATCACACTTCTGTTCATCATCGCAA 730
Query 661 TCAACTTAGCACTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTTT 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCAACTTAGCATTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTTT 790
Query 721 TAACCGGATTCTGTCTCGGTTTTGTCCTCCTTGTTCGACCGCAGTACGGTTGGGAAGCTT 780
||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 791 TAACCGGATTCTGCCTCGGGTTTGTCCTCCTTGTCCGACCTCAGTACGGTTGGGAAGCTT 850
Query 781 CCCGCACCAACACTTCACGTACCAAACGCAAGTATAGCATGTACCAGTACGCGCTGTTTG 840
|||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||
Sbjct 851 CCCGCACCAACACTTCGCGAACCAAACGAAAGTATAGCATGTACCAGTACGTGCTGTTTG 910
Query 841 TAGTCGCTGTGGTTCTACTTGTGGTTGGGTTAACAGTTGCATTAGTGATGCTTTTCAAAG 900
|||| | ||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 911 TAGTTTCAGTGGTGCTACTTGTGGTTGGGCTAACGGTTGCATTAGTGATGCTTTTCAAAG 970
Query 901 GAGAGAATGGGAACAAACATTGCAAATGGTGTCATTACCTCAGCTGTTTCCCAACTTCTA 960
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 971 GAGAGAATGGGAACAAACATTGCAAATGGTGTCATTACCTTAGCTGTTTCCCAACTTCTA 1030
Query 961 AATGGACCTGCTAatcatcatcatcatcatcat 993
|||||||||||||||||||||||||||||||||
Sbjct 1031 AATGGACCTGCTAATCATCATCATCATCATCAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5