BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924671

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63105.1 | Symbols:  | unknown protein; Has 54 Blast hits to...   490    5e-138


> AT1G63105.1 | Symbols:  | unknown protein; Has 54 Blast hits 
to 54 proteins in 32 species: Archae - 0; Bacteria - 30; Metazoa 
- 2; Fungi - 2; Plants - 3; Viruses - 0; Other Eukaryotes 
- 17 (source: NCBI BLink). | chr1:23404141-23404509 FORWARD 
LENGTH=369
Length=369

 Score =  490 bits (265),  Expect = 5e-138
 Identities = 346/382 (91%), Gaps = 18/382 (5%)
 Strand=Plus/Plus

Query  100  ATGAAAGCTACTAACACAGATTTGGGAGACGAAGCGTTTAAAGCCGTGACTAACCCGATC  159
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAAAGCCACTAACACAGATTTGGGAGACGAAGCGTTTAAAGCCGTGACAAACCCGATC  60

Query  160  CTTTCACAAATGGAGCAAATCATCAACACATCTAAACATGTTTCATATCACGTGCAAGTT  219
            ||||||||||||||| |||||||||||||| ||||||||||| |||||| ||||  ||||
Sbjct  61   CTTTCACAAATGGAGGAAATCATCAACACAGCTAAACATGTTGCATATCGCGTGGGAGTT  120

Query  220  CTACGGAA-TGCAAATTCAGATCCTAATTTTCTTCGAGATCTTGACGAGGTAGACAATAT  278
             |||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  ATACG-AAGTACAAATTCAGATCCTAATTTTCTTCGAGATCTTGACGAGGTAGACAAGAT  179

Query  279  GGGGGATGATGTCTTGGAGAAATCAAAAACTGCGTTAGACATAATGCGAAAAGCGATTGT  338
            ||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||
Sbjct  180  GGGGGATGATGTCTTTGAGAAATCAAAAACTGCCCTAGACATAATGCGAAAAGCGGTTGT  239

Query  339  GGATgcaaaggaaaggaagaaagcaagagatgaagcaataaaggaagaagaagaagcgca  398
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |
Sbjct  240  TGATGCAAAGGAAAGGAAGAAAGCTAGAGATGAAGCAATAAAGGAAGAAGAAGAAGC--A  297

Query  399  aaaacgagcaaaagaagaagaattaaagaagaaagcaaagaacgaagcaggagagagcaG  458
            |    | | ||| || ||||  | ||||||||||||||||||||||||||||||||||||
Sbjct  298  A----G-G-AAA-GAGGAAG--T-AAAGAAGAAAGCAAAGAACGAAGCAGGAGAGAGCAG  347

Query  459  T-C-CACA-C-TACCAACGTAA  476
            | | |||| | |||||||||||
Sbjct  348  TTCACACAACGTACCAACGTAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5