BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924673
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63090.1 | Symbols: AtPP2-A11, PP2-A11 | phloem protein 2-A1... 1399 0.0
> AT1G63090.1 | Symbols: AtPP2-A11, PP2-A11 | phloem protein 2-A11
| chr1:23391063-23392851 REVERSE LENGTH=1332
Length=1332
Score = 1399 bits (757), Expect = 0.0
Identities = 859/908 (95%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 4 CAGGGTTTTGATAACCCCATGGGTTCAGGGTTCTCTCTGTTTCACAATAGTCTATCGTCT 63
|||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 225 CAGGGTTTTGATAACCCCATGGGTTCAGGGTTCTCTCTGTTTCAAAAGAATTTATCGTCT 284
Query 64 TGTTATGGAGATCGAGATCTGTTGCAGCCTGGTTTAGGAGATTTGCCTGAAAGTTGTGTG 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGTTATGGAGATCGAGATCTGTTGCAGCCTGGTTTAGGAGATTTGCCTGAAAGTTGTGTG 344
Query 124 GCTTTGATTCTCCAGAATTTGGATCCGGTTGAGATCTGTAGATTCTCAAAGCAAAACAAA 183
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 345 GCTTTGATTCTCCAGAATTTGGATCCCGTTGAGATCTGTAGATTCTCCAAGCTAAACACG 404
Query 184 GCTTTTCATGGTGCTTCTTGGGCTGATTTCGTTTGGGAATCGAAACTTCCTCCAGATTAT 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCTTTTCATGGCGCTTCTTGGGCTGATTTCGTTTGGGAATCGAAACTTCCTCCAGATTAT 464
Query 244 AGATTGATTCTCGAGAAAATCCTTGGTGGTTTCCCGGAAAATTTGCGTAAACGAGACATC 303
| ||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 465 AAATTGATTCTCGAGAAAATCCTTGGTAGTTTCCCTGATAATTTGCGTAAAAGAGACATC 524
Query 304 TTTACTTTTCTCTCTCGAGTTAATTCCTTCGACGAGGGCAACAAGAAAGCTTGGGTAGAT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTTACTTTTCTCTCTCGAGTTAATTCCTTCGACGAGGGCAACAAGAAAGCTTGGGTAGAT 584
Query 364 AAACGAACAGGTGGGCTCTGTTTATGCATATCGGCAAAGGGCTTGTCGATAACCGGAATC 423
|||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||
Sbjct 585 AAACGAACAGGTGGGCTCTGTTTATGCACATCAGCCAAGGGCTTATCCATAACCGGAATT 644
Query 424 GATGATCGGAGATACTGGAGTCATATTCCGACTGATGATTCTCGATTTTCTTCAGTGGCA 483
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct 645 GATGATCGGAGATACTGGAGTCATATTCCGTCTGATGATTCTCGATTTGCTTCAGTAGCT 704
Query 484 TATGTTCAACAAATCTGGTGGTTTCAAGTTGATGGAGAAATCGATTTCCCATTTCCAGCA 543
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 705 TATGTTCAACAGATCTGGTGGTTTCAAGTTGATGGAGAAATTGATTTCCCATTTCCAGCT 764
Query 544 GGAACCTACAGTGTTTACTTCAGGCTTCAGCTAGGCAAACCGGGCAAGCGGTTTGGTTGG 603
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 765 GGAACCTACAGTGTTTACTTCAGGCTTCAGCTAGGCAAACCAGGCAAGCGGTTTGGTTGG 824
Query 604 AGGGTTTGT-GATACAGAACAGGTTCATGGCTGGAACATCAAACCGGTTCGGTTTCAACT 662
| |||| || || || ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 825 AAGGTT-GTTGACACCGAACAGGTTCATGGCTGGAACATTAAACCTGTTCGTTTTCAACT 883
Query 663 CTCGACTGAAGATGGACAACATTCTTCATCTCAATGTATGTTAACCGAAGCAGGAAACTG 722
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CTCGACTGAAGATGGTCAACATTCTTCATCTCAATGTATGTTAACCGAAGCAGGAAACTG 943
Query 723 GAGTCATTACCATGCTGGAGACTTTGTGGTTGGTAAATCGAAAAATTCATCGACGAAGAT 782
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 944 GAGTCATTACCATGCTGGAGACTTTGTGGTCGGTAAATCGAAAAGTTCATCGACGAAGAT 1003
Query 783 TAAGTTCTCCATGACTCAGATTGATTGCACGCATACTAAAGGCGGGCTATGTGTAGATTC 842
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1004 TAAGTTCTCGATGACTCAGATTGATTGCACGCATACTAAAGGCGGGTTATGTGTAGATTC 1063
Query 843 TGTAGTTGTGTATCCGAGCTCGTGTAAGG-----TTGACGCAGATTTAAGTTGCAAACTG 897
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 1064 TGTAGTTGTGTATCCGAGCTCGTGTAAGGACCGGTTGATGCAGATTTAAGTTGCAAACCG 1123
Query 898 GAGTTTGG 905
||||||||
Sbjct 1124 GAGTTTGG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5