BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924676

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   763    0.0  


> AT1G63060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, 
male gametophyte, flower; EXPRESSED DURING: L mature pollen 
stage, M germinated pollen stage, 4 anthesis, petal differentiation 
and expansion stage; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 
Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr1:23384043-23385042 
FORWARD LENGTH=664
Length=664

 Score =  763 bits (413),  Expect = 0.0
 Identities = 462/486 (95%), Gaps = 1/486 (0%)
 Strand=Plus/Plus

Query  1    AGCAAATTACTTTTCACCGAAATGGCTTTCAGAATCACCAGTCAATTGCGACCGGTTAGA  60
            ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||  ||
Sbjct  42   AGCAAATTAATTTTCACCGAGATGGCTTTCAGAATCACCAGCCAATTGCGACCGGTCGGA  101

Query  61   AACCAATTTGGTGGCTCTCGTCGTTTAACAACCACGGTCGCCGATGGCGCCAAACAAACA  120
            || |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||
Sbjct  102  AATCAATTTGGTGGCTCTCGTCGTTTTGCAACCACAGTCGCCGATGGCGCCAAACAAACA  161

Query  121  TATAACAAGTTCTCCATAATGGGAGAGTTTGCACCAGTGGCTATAATAGGAGGTTTTGTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  TATAACAAGTTCTCCATAATGGGAGAGTTTGCACCAGTGGCTATAATAGGAGGTTTTGTT  221

Query  181  GGTTTAGCGGTGCTTATGGCCGGACATAGCATCAAGCAGCAGCTTATGCATGCTCCGGCA  240
            ||||||||||| || |||||||| |||||| ||||||| |||||||||||||| ||||||
Sbjct  222  GGTTTAGCGGTACTAATGGCCGGGCATAGCCTCAAGCAACAGCTTATGCATGCACCGGCA  281

Query  241  ATCAGTACAAGAAAGAATAGAAGAGCGGCTGTCGCAGAAGTCGATGATCCAGAAAATTGT  300
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  282  ATCAGTACAAGAAAGAATAGAAGAGCGGCTGTCGCGGAAGTCGATGATCCAGAAAACTGT  341

Query  301  GTTTCCTCTGCTGACAAATTTATCAACAAGTCTTGGCTACGTAAAGTAGGTCAGATTCAA  360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  342  GTTTCCTCTGCTGACAAATTTATCAACAAGTCTTGGTTACGTAAAGTAGGTCAGATTCAA  401

Query  361  GATAAGTCTAAAGCAATCTTATCTGATCCCACTCGACCTAACCCATTCACCACGCCTCGA  420
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  GATAAATCTAAGGCAATCTTATCTGATCCCACTCGACCTAACCCATTCACCACGCCTCGA  461

Query  421  AATGCAGAGACATTGAACTCCGTTGGTGTGGCTCCAAAGGGAATCTGAAAAACTTTCTGA  480
            ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct  462  AATGCAGAGACATTGAACTCCGTCGGCGTGGCTCCAAAGGGAATCTGAAAA-CTTTCTGA  520

Query  481  TGAATC  486
             |||||
Sbjct  521  AGAATC  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23258410061


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5