BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924683
Length=4412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuc... 6741 0.0
> AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear
RNA polymerase D1A | chr1:23355017-23362564 REVERSE LENGTH=4948
Length=4948
Score = 6741 bits (3650), Expect = 0.0
Identities = 4169/4420 (94%), Gaps = 34/4420 (1%)
Strand=Plus/Plus
Query 8 GAATCTCTTCGACATGGAAGACGATTGCGAGGAGCTTCAGGTTCCCGTGGGAACTCTAAC 67
||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 262 GAAACTCTTCAACATGGAAGACGATTGTGAGGAGCTTCAGGTTCCCGTGGGAACTCTAAC 321
Query 68 TTCGATAGGTTTTAGCATTTCAAATAACACTGATCGAGATACAATGTCTGT-CATAAAGG 126
||||||||||||||||||||||| |||| ||||||||||| ||||||||| | || |||
Sbjct 322 CTCGATAGGTTTTAGCATTTCAAACAACAATGATCGAGATAAAATGTCTGTGC-TAGAGG 380
Query 127 TTGAAGCACCGAATCAGGTGACTGATTCTCGGCTAGGGCTACCGAATCCGGATTCTATCT 186
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 381 TTGAAGCACCGAATCAGGTGACTGATTCTCGGCTAGGATTACCGAATCCGGATTCTGTCT 440
Query 187 GCAAAACCTGTGGCAGCAAAGATCGAAAAGTTTGCGAAGGGCATTTCGGGGTTATAAACT 246
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GCAGAACCTGTGGCAGCAAAGATCGAAAAGTTTGCGAAGGGCATTTCGGGGTTATAAACT 500
Query 247 TC-CAGTACTCGATAATAAACCCGTATTTCCTCAAGGAGATAGCTGCGTTGTTAAACAAA 305
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 501 TCGC-GTACTCGATAATAAACCCGTATTTCCTCAAGGAGGTAGCTGCGTTGTTAAACAAA 559
Query 306 ATCTGTCCGGGTTGTAAATACATTCGAAAAAAGCAGTTTCAGATTACCGAAGACCAGCCT 365
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATCTGTCCGGGGTGTAAATACATTCGAAAAAAGCAGTTTCAGATTACCGAAGACCAGCCT 619
Query 366 GAGAGATGTAGATATTGCACTTCGAATACCGGTTATCCTCTAATGAAGTTTAGAGTAACT 425
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 620 GAGAGATGTAGATACTGCACTTTGAATACCGGTTATCCTCTAATGAAGTTTAGGGTAACT 679
Query 426 ACTAAAGAAGTCTTCAGGCGATCCGGAATCGTTGTTGAAGTAAACGAAGAGAGTCTGATG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ACTAAAGAAGTCTTCAGGCGATCCGGAATCGTTGTTGAAGTAAACGAAGAGAGTCTGATG 739
Query 486 AAACTCAAGAAACGGGGAGTGTTAGCATTGCCTCCTGACTATTGGAGTTTTGTGCCACAA 545
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 740 AAACTCAAGAAACGGGGAGTGTTAACATTGCCTCCTGACTATTGGAGTTTTTTGCCGCAA 799
Query 546 GACTCCAATATCGACGAGAGCTGTTTGAAACCAACAAGGCGGATACTAACGCATGCACAG 605
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 800 GACTCTAATATCGACGAGAGCTGTTTGAAACCAACAAGGCGAATAATAACGCATGCACAG 859
Query 606 GTTTATGCTCTGCTATCT-GGGATTGATCAGAGACTCATCAAGAAGGATATCCCCATGTT 664
|||||||||||| ||| | |||||||||||||| |||||||||||||||||||| |||||
Sbjct 860 GTTTATGCTCTGTTAT-TAGGGATTGATCAGAGGCTCATCAAGAAGGATATCCCTATGTT 918
Query 665 CGACTCTCTTGCTCTGACATCTTTTCCTGTTACACCAAACGGTTACCGTGTAACCGAAAT 724
| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 919 CAACTCTCTTGGTCTGACATCTTTTCCTGTTACACCAAATGGTTACCGTGTAACCGAAAT 978
Query 725 AGTTCATCAGTTCAATGGAGCTCGACTAGTATTTGATGAACGGACTCGGATATACAGGAA 784
||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |||
Sbjct 979 AGTTCATCAGTTCAACGGAGCTCGGCTAATATTTGATGAACGGACTCGGATCTACAAGAA 1038
Query 785 ACTAGTCGGCTTTGAGGGAAACACGCTTGAATTGAGTTCTCGCGTGATTGAATGCATGCA 844
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1039 ACTAGTCGGCTTTGAGGGAAACACACTTGAATTGAGTTCTCGTGTGATGGAATGCATGCA 1098
Query 845 ATATTCCAGACTCTTTTCGGAAAATGTGTCTTCGAGTCAAGATTCCGCAAATCCATACCA 904
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 1099 ATATTCCAGACTCTTTTCGGAAACTGTGTCTTCGAGTAAAGATTCCGCAAATCCGTACCA 1158
Query 905 AAAGAAGTCTGATACACCAAAACTGTGCGGTCTAAGGTTCATGAAGGACGTGCTGCTCGG 964
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1159 GAAGAAGTCTGATACACCAAAACTTTGCGGTCTAAGGTTCATGAAAGACGTGCTGCTCGG 1218
Query 965 TAAAAGAAGCGATCATACATTCCGGACAGTAGTTGTTGGTGATCCGTCCTTGAAGCTTCA 1024
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 TAAAAGAAGTGATCATACATTCCGGACAGTAGTTGTTGGTGATCCGTCCTTGAAGCT-CA 1277
Query 1025 T-GAGATTGGCATACCCGAGCGTATCGCAAAAAGGCTTCAAGTATCAGAGCATCTCAACA 1083
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1278 ACGAGATTGGCATACCCGAGAGTATCGCAAAAAGGCTTCAAGTATCAGAGCATCTCAACC 1337
Query 1084 ACTGGAACAACGAACGGCTAGTCACTTTCTGT-TCCCC-CAACCTGTTCGATAATAAAGA 1141
| || || || ||| |||| ||||||| || | ||||| || | |||| || ||||||||
Sbjct 1338 AGTGCAATAAAGAAAGGCTTGTCACTTCCTTTGTCCCCACA-C-TGTTGGACAATAAAGA 1395
Query 1142 GGTGCATGTGAGAAGAGGAGATAGATTGGTGGCTATTCGAGTCAGTGACCTCCAAACCGG 1201
| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1396 GATGCATGTGAGAAGAGGAGATAGATTGGTGGCTATTCAAGTCAATGACCTCCAAACCGG 1455
Query 1202 AGACAAAATATTCCGGAATTTAATGGATGGAGACACAGTGCTGATGAACAGACCGCCTTC 1261
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1456 AGACAAAATATTCCGGAGTTTAATGGATGGAGACACTGTGCTGATGAACAGACCGCCTTC 1515
Query 1262 GATTCATCAGCATTCGCTTATTGCAATGACAGTTAGAGTCCTCCCAACGACTTCTGTTGT 1321
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1516 GATTCATCAGCATTCGCTTATTGCAATGACAGTTAGAATCCTCCCAACGACTTCTGTTGT 1575
Query 1322 CTCCTTGAATCCGATCTGCTGTTTGCCGTTTCGTGGTGATTTTGATGGAGATTGTCTTCA 1381
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1576 CTCCTTGAACCCGATCTGCTGTTTGCCGTTCCGTGGTGATTTTGATGGAGATTGTCTCCA 1635
Query 1382 CGGTTACGTTCCTCAGTCCATTCAAGCAAAGGTCGAGCTTGATGAGCTTGTTGCTTTGGA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CGGTTACGTTCCTCAGTCCATTCAAGCAAAGGTCGAGCTTGATGAGCTTGTTGCTTTGGA 1695
Query 1442 TAAGCAGCTTATCAACCGACAGAATGGTCGGAACTTGCTTTCCTTAGGACAAGATAGCTT 1501
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1696 TAAGCAGCTTATCAACAGACAGAATGGTCGGAACTTGCTTTCTTTAGGACAAGATAGCTT 1755
Query 1502 GACGGCGGCTTATCTGGTTAATGTCGAGAAGAACTGTTATCTGAATCGAGCTCAGATGCA 1561
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1756 GACGGCGGCTTATCTGGTCAATGTTGAGAAGAACTGTTATCTTAATCGAGCTCAGATGCA 1815
Query 1562 GCAGCTTCAAATGTACTGCCCATTTCAGCTTCCTCCGCCTGCGATTATCAAAGCTTCTCC 1621
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1816 GCAGCTTCAAATGTATTGCCCATTTCAGCTTCCTCCGCCTGCAATTATCAAAGCTTCTCC 1875
Query 1622 TTCGAGCACTGAGCCTCAATGGACGGGAATGCAGCTATTCGGGATGCTGTTTCCTCCCGG 1681
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1876 TTCGAGCACTGAGCCTCAATGGACGGGAATGCAGCTATTCGGAATGCTGTTTCCTCCCGG 1935
Query 1682 GTTTGACTACACTTACCCTCTGAATGATGTGGTTGTGAGTAACGGAGAACTTTTGTCTTT 1741
||||||||||||||| ||||||||| |||| |||||||||||||| || |||||||||||
Sbjct 1936 GTTTGACTACACTTATCCTCTGAATAATGTAGTTGTGAGTAACGGCGAGCTTTTGTCTTT 1995
Query 1742 CTCTGAAGGATCTGCTTGGCTCCGAGATGGAGAAGGTAATTTCATCCAGGGATTGATCAA 1801
|||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| ||||
Sbjct 1996 CTCTGAAGGATCTGCTTGGCTCAGAGATGGAGAAGGGAATTTCATCGAGAGATTGCTCAA 2055
Query 1802 ACACGACAAAAGGAAAGTTCTTGATATCATCTATTCCGCTCAAGAAATGCTATCTCAGTG 1861
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 ACACGACAAAGGGAAAGTTCTTGATATCATCTATTCCGCTCAAGAAATGCTATCTCAGTG 2115
Query 1862 GTTGCTGATGCGCGGATTGAGTGTTTCCTTGGCGGATTTGTACCTTTCCTCTGATCCGCA 1921
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2116 GTTGCTGATGCGCGGTTTGAGTGTGTCCTTGGCGGATTTGTACCTTTCCTCTGATCTGCA 2175
Query 1922 GTCTCGTAAAAACTTGACTGAAGAGATATCATACGGATTACGGGAAGCTGAGCAAGTCTG 1981
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2176 GTCTCGAAAAAACTTGACTGAAGAGATATCATACGGGTTGCGGGAAGCTGAGCAAGTTTG 2235
Query 1982 CAACAAGCAACAGCTAATGGTTGAATCTTGGAGAGATTTCCTTGCAGTTAATGGGGAGGA 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 CAACAAGCAACAGCTAATGGTTGAATCTTGGAGAGATTTCCTTGCAGTTAATGGGGAGGA 2295
Query 2042 TGAGGGAGAGGATTCAGT-TGCGGGGGATTTGGCCCGGTTCTGCTATGAGAGACAAAAAT 2100
| ||| |||||||||||| | ||| |||||||||| ||||||||||||||||||||||
Sbjct 2296 TAAGGAAGAGGATTCAGTAT-CGG---ATTTGGCCCGATTCTGCTATGAGAGACAAAAAT 2351
Query 2101 CCGCTACATTAAGCAAAATTGCAGTTAGTGCTTTTAAGGATGCTTGCAGAGATGTTCAGG 2160
|||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2352 CCGCTACATTAAGCGAACTTGCAGTCAGTGCTTTTAAGGATGCTTACAGAGATGTTCAGG 2411
Query 2161 CACTAGCATATAGGTATGGCGATCAATCCAACTCTTTTTTGATCATGTCAAAAGCCGGTA 2220
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 2412 CACTAGCATATAGGTATGGTGATCAATCCAACTCTTTTTTGATCATGTCGAAAGCCGGCA 2471
Query 2221 GCAAAGGGAATATCGGGAAGCTGGTTCAACACAGCATGTGTATCGGTCTGCAGAATTCGG 2280
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2472 GCAAAGGGAATATCGGGAAGCTGGTTCAGCACAGCATGTGTATCGGTCTGCAGAATTCAG 2531
Query 2281 CAGTTTCTTTGTCCTATGGGTTTCCGCGTGAGCTGACTTGCGCTTCTTGGAATGACCCGA 2340
||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2532 CAGTTTCTTTGTCCTTTGGGTTTCCGCGTGAACTGACTTGCGCTGCTTGGAATGACCCGA 2591
Query 2341 ACAGTCCACTTCGTGGCGCAAAGGGAGAAGACAGTACCGCTACTGAGTCATATGTTCCTT 2400
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2592 ACAGTCCACTTCGTGGCGCAAAGGGAAAAGACAGTACCACTACTGAGTCATATGTTCCTT 2651
Query 2401 ATGGAGTCATTGAGAACTCGTTTCTAACGGGTCTGAATCCGTTGGAATCTTTTGTTCATT 2460
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2652 ATGGAGTCATTGAGAACTCGTTTCTAACGGGTCTGAATCCATTGGAATCTTTTGTTCATT 2711
Query 2461 CAGTTACAAGTCGTGACAGCTCATTCAGTGGTAATGCTGATCTCCCCGGGACACTGAGCA 2520
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2712 CAGTTACAAGTCGTGACAGTTCATTCAGTGGTAATGCTGATCTCCCGGGGACACTGAGCA 2771
Query 2521 GAAGATTAATGTTCTTCATGCGGGACATATACGCTGCTTATGATGGCACAGTGAGAAATT 2580
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2772 GAAGATTAATGTTCTTCATGCGGGACATATACGCTGCTTATGATGGCACTGTGAGAAATT 2831
Query 2581 CTTTCGGAAACCAGTTAGTCCAGTTTACTTATGAGACTGATGGTCCCGTTGAAGATATCA 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2832 CTTTCGGAAACCAGTTAGTCCAGTTTACTTATGAGACTGATGGTCCCGTTGAAGATATCA 2891
Query 2641 CCGGTGAAGCACTTGGCTCACTTTCTGCTTGTGCATTATCTGAGGCAGCTTACAGCGCGC 2700
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2892 CAGGTGAGGCACTTGGCTCACTTTCTGCTTGTGCATTATCTGAGGCAGCTTACAGCGCGC 2951
Query 2701 TGGACCAGCCAATCAGCCTTCTGGAAACTTCGCCGCTTCTGAATCTTAAGAATGTCTTGG 2760
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2952 TGGACCAGCCAATCAGCCTTCTTGAAACTTCGCCGCTTCTGAATCTTAAGAATGTATTGG 3011
Query 2761 AGTGTGGATCGAAGAAAGGTCAAAGAGAACAGACTATGACTTTGTATTTGTCTGAA-ACC 2819
|||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||
Sbjct 3012 AGTGTGGATCAAAGAAAGGTCAACGAGAACAGACAATGTCTTTGTATTTGTCTGAATACC 3071
Query 2820 CTTTCAAAGAAAAAGCACGGGTTCGAATACGGGTCACTGGAGATCAAGAACCACTTGGAG 2879
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3072 -TTTCAAAGAAAAAGCACGGGTTCGAATACGGGTCACTTGAGATCAAGAACCACTTGGAG 3130
Query 2880 AAACTAAGTTTCTCTGAGATCGTTTCAACATCTATGATAATATTCTCTCCAAGTACTAAC 2939
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3131 AAACTTAGTTTCTCAGAGATCGTTTCAACATCTATGATAATATTCTCTCCAAGTTCTAAC 3190
Query 2940 ACGAAAGTACCGTTAAGCCCGTGGGTTTGCCATTTTCATATCTCTGAGAAAGTACTGAAG 2999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3191 ACGAAAGTACCGTTAAGCCCGTGGGTTTGCCATTTTCATATCTCTGAGAAAGTACTGAAG 3250
Query 3000 CGGAAACAACTCAACGTAGAATCCGTGGTTTCTTCATTAAACGAGCAGTACAAGAGCAGG 3059
||||||||||| | || ||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 3251 CGGAAACAACTGAGCGCAGAATCCGTTGTTTCATCTTTAAACGAGCAGTACAAGAGCAGG 3310
Query 3060 AACAGAGAACTGAAGCTTGATATAGTTGATTTAGATATACAAAGCACAAACCACTGCTCT 3119
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3311 AACAGAGAACTGAAGCTTGATATAGTTGACTTAGATATACAAAACACAAACCACTGCTCT 3370
Query 3120 TCAGACGATGAGGCAATGAAGGATGATAGCTTTTGCATCACGGTGACTGTAATCGAAGCC 3179
||||||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 3371 TCAGACGATCAGGCAATGAAGGATGATAACGTTTGCATCACGGTGACTGTAGTTGAAGCC 3430
Query 3180 TCAAAGCACTCGGTTTTGGAACTGGATGCTATTCGTCTCGTTTTGATCCCTTTTCTTCTT 3239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3431 TCAAAGCACTCGGTTTTGGAACTGGATGCTATTCGTCTCGTTTTGATCCCTTTTCTTCTT 3490
Query 3240 GACTCTCCTGTCAAAGGTTCTCAAGAGATTAAAAAGGTGGATATCTTATGGACAGACCGA 3299
|||||||||||||||||| ||||| ||| ||||||||| |||| || ||||| ||||||
Sbjct 3491 GACTCTCCTGTCAAAGGTGATCAAGGGATCAAAAAGGTGAATATTTTGTGGACTGACCGA 3550
Query 3300 CCAAAAGCGCCAAAAAGGAACGGGGACCATTTGGCGGGTGAGCTGTACTT-AAGGGTTAC 3358
|||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||
Sbjct 3551 CCAAAAGCGCCAAAAAGGAATGGGAATCATTTGGCGGGTGAGCTGTACTTGAAGG-TTAC 3609
Query 3359 AATGTATGGAGATCGGGGAAAAAGAAACTGTTGGACCGCTCTTTTAGAAACCTGTCTTCC 3418
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 3610 AATGTATGGAGATCGGGGCAAAAGAAACTGTTGGACCGCTCTTTTAGAAACCTGCCTTCC 3669
Query 3419 CATTATGGATATGATTGACTGGAGCCGAAGCCATCCTGATAATATCCGACAATGCTGCTC 3478
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3670 CATCATGGATATGATTGACTGGGGCCGAAGCCATCCTGATAATATCCGACAATGCTGCTC 3729
Query 3479 GGTTTATGGAATAGACGCTGGACGGAGCATTTTCATAGCAAATTTGGAGTCCGCGGTGTC 3538
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 3730 AGTTTATGGAATAGATGCTGGACGCAGCATTTTCGTAGCAAATTTGGAGTCCGCGGTGTC 3789
Query 3539 AGATACCGGTAAG-ACGATACTAAAAGAGCATCTGCTTCTCGTAGCTGACAGTCTCTCTG 3597
|||||| |||||| | |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 3790 AGATACTGGTAAGGA-GATACTAAGAGAGCATCTGCTTCTCGTAGCTGATAGTCTCTCTG 3848
Query 3598 TTACCGGAGAATTTGTGGCATTAAACGCCAAAGGTTGGAGTAAACAAAGACAGGTCGAGT 3657
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 TTACGGGAGAGTTTGTGGCATTAAACGCCAAAGGTTGGAGTAAACAAAGACAGGTCGAGT 3908
Query 3658 CCACGCCTGCACCTTTTACTCAAGCATGCTTTTCGAGCCCAAGTCAATGCTTTCTCAAAG 3717
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 3909 CCACGCCTGCACCTTTTACTCAAGCATGCTTCTCAAGCCCAAGTCAATGCTTTCTCAAAG 3968
Query 3718 CTGCTAAGGAAGGTGTTAGAGACGATCTTCAAGGGTCTATCGACGCGCTAGCTTGGGGAA 3777
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3969 CTGCTAAGGAAGGTGTCAGAGACGATCTTCAAGGGTCTATCGACGCTTTAGCTTGGGGAA 4028
Query 3778 AAGTTCCTGGTTTTGGAACTGGAGATCAGTTTGAAATCATCATTTCGCCAAAGGTTCACG 3837
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4029 AAGTTCCTGGTTTCGGAACTGGAGATCAGTTCGAAATCATCATTTCGCCAAAGGTTCACG 4088
Query 3838 GGTTTACTACACCGGTAAATGTGTATGACCTTCTGAGTAGTACAC---C--TCCAAAGA- 3891
||||||||||||||||| |||||||||||||| ||||||||||| | | | |||
Sbjct 4089 GGTTTACTACACCGGTAGATGTGTATGACCTTTTGAGTAGTACAAAGACGATGCGTAGAA 4148
Query 3892 CAAACTCTGCGCCTAAATCAGACAAAGTCACGGTCCAGCCATTCGACTTGCTAGGTACCG 3951
||||||||||||||||||||||||||| |||||||||||| || | ||||||| | |||
Sbjct 4149 CAAACTCTGCGCCTAAATCAGACAAAGCCACGGTCCAGCCTTTTGGCTTGCTACATTCCG 4208
Query 3952 CATTCCTGAAAGGTATCAAGGTACTCGATGGGAAAGGGATTTCTATGTCACGGCTTAGAA 4011
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 4209 CATTCCTGAAAGATATCAAGGTACTCGATGGGAAAGGGATTCCTATGTCACTGCTTAGAA 4268
Query 4012 CGATCTTTACATGGGAAAACATCGAGAAGCTTTCCCAGTCACTGAAACGCATACTC-ACC 4070
|||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| ||
Sbjct 4269 CGATCTTTACATGGAAAAACATCGAGTTGCTTTCCCAGTCATTGAAACGCATTCTCCAC- 4327
Query 4071 AGTTACGAGATCAATGATCCATTGAATGGGAGGGACGAAGAACTTGTGATGATGGTTCTG 4130
||||||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||
Sbjct 4328 AGTTACGAGATCAATGAACTGTTGAATGAGAGGGACGAAGGACTTGTGAAGATGGTTCTG 4387
Query 4131 CACTTGCACCCCAACAGAGCTGAGAAAATTGGACCAGGCCTTAAAGGAATCCGGGTCGCT 4190
|| |||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||
Sbjct 4388 CAGTTGCACCCCAACAGTGTTGAGAAAATTGGACCAGGCGTCAAAGGAATCCGGGTCGCT 4447
Query 4191 AAATCGAAGCACGGAGATTCTCGTTGCTTCGAGGTTGTAAGAATAGACGGGACATTCGAA 4250
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4448 AAATCGAAGCACGGAGATTCTTGTTGCTTCGAGGTTGTAAGAATAGACGGGACATTCGAA 4507
Query 4251 GACTTTTCGTACCACAAGTGTGTCTTGGGAGCAACAAAGATCATTGCCCCAAAGAAAATG 4310
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4508 GACTTCTCATACCACAAGTGTGTCTTGGGAGCAACAAAGATAATTGCCCCAAAGAAAATG 4567
Query 4311 AACTTATACAAGTCAAAGTATCTTAAAAATGGTACACACCAGCCCGGTAGGCT-CTCCGA 4369
||||| ||||||||||||||||||||||||||||||| | || ||||| || | ||||||
Sbjct 4568 AACTTCTACAAGTCAAAGTATCTTAAAAATGGTACACTCGAGTCCGGT-GGTTTCTCCGA 4626
Query 4370 AAACCCGCAAACAGTCAAGTAAAAGGAAGAAAAG-GACTG 4408
||||||| ||||| ||||||| || || |||| |||||
Sbjct 4627 AAACCCGTGAACAGCCAAGTAAGAGTAAAAAAAAAGACTG 4666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 219982045055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5