BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924687
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63000.1 | Symbols: NRS/ER, UER1 | nucleotide-rhamnose synth... 1559 0.0
> AT1G63000.1 | Symbols: NRS/ER, UER1 | nucleotide-rhamnose synthase/epimerase-reductase
| chr1:23342393-23344113 FORWARD LENGTH=1277
Length=1277
Score = 1559 bits (844), Expect = 0.0
Identities = 913/946 (97%), Gaps = 6/946 (1%)
Strand=Plus/Plus
Query 1 CGGCGAAAATTTTCCGATCACCGAC---aaaaaaaaaTGGTTGCAGACGCAAACGG---A 54
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 82 CGGCGAAAACTTTCCGATCACCGACAAAAAAAAAAAATGGTTGCAGACGCAAACGGTTCA 141
Query 55 TCATCAACCTCCTTCAACTTCCTAATCTACGGTCGAACCGGATGGATCGGTGGTTTACTC 114
||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 142 TCATCAAGCTCATTTAACTTCCTAATCTACGGTAAAACCGGATGGATCGGTGGTTTACTC 201
Query 115 GGTAAACTCTGCGAATCTCAAGGAATCTCTTACACTTACGGCTCCGGTCGTCTTCAAGAT 174
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 202 GGTAAACTCTGCGAAGCTCAAGGAATCACTTACACTTACGGCTCCGGTCGTCTTCAAGAT 261
Query 175 CGTCAATCTATCATCGCCGACATCGAATCTGTGAAACCTAGCCACGTGTTCAACGCCGCT 234
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 262 CGTCAATCGATCGTCGCCGACATCGAATCCGTGAAACCTAGCCACGTGTTCAACGCTGCT 321
Query 235 GGAGTCACCGGTCGTCCTAATGTTGATTGGTGCGAATCTCACAAAGTTGAGACGATTCGT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GGAGTCACCGGTCGTCCTAATGTTGATTGGTGCGAATCTCACAAAGTTGAGACGATTCGT 381
Query 295 ACTAATGTCGCCGGAACCCTAACTCTCGCCGACATTTGCAGAGAGAAAGGACTTGTTCTG 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 382 ACTAATGTCGCCGGAACCCTAACTCTCGCTGACATTTGCAGAGAGAAAGGACTTGTTCTG 441
Query 355 ATCAATTACGCTACGGGTTGTATATTTGAGTATGATTCGGGTCATCCTCTCGGGTCGGGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATCAATTACGCTACGGGTTGTATATTTGAGTATGATTCGGGTCATCCTCTCGGGTCGGGT 501
Query 415 ATTGGATTCAAGGAGGAGGATACTCCTAATTTCACCGGATCTTTCTACTCTAAAACCAAA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATTGGATTCAAGGAGGAGGATACTCCTAATTTCACCGGATCTTTCTACTCTAAAACCAAA 561
Query 475 GCTATGGTGGAGGAGCTGCTCAAGAACTATGAAAATGTGTGCACGCTAAGAGTGCGAATG 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 562 GCTATGGTGGAGGAGCTGCTCAAGAACTATGAAAATGTATGCACGCTAAGAGTGCGAATG 621
Query 535 CCGATTTCTTCGGATCTAACAAACCCGAGAAACTTCATCACGAAGATTGCTCGGTATGAG 594
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CCGATTTCATCGGATCTAACAAACCCGAGAAACTTCATCACGAAGATTGCTCGGTATGAG 681
Query 595 AAAGTTGTGGATATCCCAAACTCGATGACTATTCTCGATGAGCTTCTCCCGATATCAATC 654
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 682 AAAGTTGTGGACATCCCAAACTCGATGACAATCCTCGATGAGCTTCTCCCGATATCAATC 741
Query 655 GAAATGGCAAAGAGGAACTTAACCGGGATCTACAATTTCACTAACCCGGGGGTTGTGAGC 714
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 742 GAAATGGCGAAGAGGAACTTAACCGGGATCTACAATTTCACTAACCCGGGTGTTGTGAGC 801
Query 715 CATAATGAGATCTTGGAGATGTACAGAGACTACATTGACCCGAGTTTTACTTGGAAGAAC 774
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CACAACGAGATCTTGGAGATGTACAGAGACTACATTGACCCGAGTTTTACTTGGAAGAAC 861
Query 775 TTCACATTGGAGGAACAAGCTAAAGTGATTGTGGCTCCAAGGAGTAACAATGAGCTCGAT 834
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 862 TTCACATTGGAGGAACAAGCTAAAGTGATTGTGGCGCCAAGGAGTAACAATGAGCTTGAT 921
Query 835 GCGACTAAGTTGAAGACTGAGTTCCCTGAGTTGATGTCTATCAAAGAGTCTCTGATCAAG 894
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GCAACTAAGTTGAAGACTGAGTTCCCTGAGTTGATGTCTATCAAAGAGTCTCTGATCAAG 981
Query 895 TTCGTGTTTGAGCCGAACAAGAAGACTGAGGTTAAAGCTTGAAATG 940
|||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 982 TTCGTGTTTGAGCCCAACAAGAAGACTGAAGTTAAAGCTTGAAATG 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5