BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924690
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62980.1 | Symbols: ATEXPA18, EXP18, ATEXP18, ATHEXP ALPHA 1... 1279 0.0
> AT1G62980.1 | Symbols: ATEXPA18, EXP18, ATEXP18, ATHEXP ALPHA
1.25, EXPA18 | expansin A18 | chr1:23331676-23333110 FORWARD
LENGTH=1002
Length=1002
Score = 1279 bits (692), Expect = 0.0
Identities = 777/819 (95%), Gaps = 2/819 (0%)
Strand=Plus/Plus
Query 1 CCCTCAAGAAAACAGAGTAAAAATGGATCAAAATTTGTATCGCAAGTGCTTGGTTATTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 31 CCCTCAAGAAAACAGAGTAAAAATGGATCAAAATTTGTATCGCAAGTGCCTGGTTATTTT 90
Query 61 ATCAATGATGGCACTGATCGGCACATCAATGGCGGCATATGCGGGGACCCCATGGCGTAC 120
||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 91 ATCGATGATGGCAATGATCGGCACATCAATGGCTACATATGCCGGGACCCCATGGCGTAC 150
Query 121 GGCCTCAGCCACTTTTTACGGTGATGAGACCGGCAGCGCAACTATGGGTGGGGCTTGTGG 180
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 151 AGCCTCAGCCACTTTTTACGGTGACGACACCGGCAGCGCAACTATGGGTGGGGCTTGTGG 210
Query 181 CTATGGTAACATGTGGGACAGCGGCTACGGCGTAGCCACGACTGCTCTGAGCACAGCTCT 240
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 211 CTATGGTAACATGTATGACAGCGGCTACGGGGTAGCCACGACTGCGCTGAGCACAGCCCT 270
Query 241 GTTCAACGACGGTTATGCATGCGGTCAATGTTTCCAGATAAGGTGTGTGTCATCGCCTAA 300
||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 271 GTTCAACGAGGGTTATGCATGCGGTCAATGTTTCCAGTTAAAGTGTGTGTCGTCGCCTAA 330
Query 301 CTGCTACTACGGTTCACCAGCCACCGTGGTGACTGCCACCAACATATGTCCACCAAATTA 360
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 331 CTGCTACTACGGGTCACCAGCCACCGTGGTAACTGCAACCAACATATGTCCACCAAATTA 390
Query 361 TGGCCAAGCTTCCAACAATGGTGGATGGTGTAATCCACCACAAGTCCATTTTGATTTGGC 420
||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 391 TGGCCAAGCATCCAACAATGGTGGATGGTGTAATCCGCCACGAGTCCATTTTGATTTGAC 450
Query 421 TAAACCAGCTTTCATGAAGATCGCTAATTGGAAGGCTGGTATCATCCCCCTCTCATACCG 480
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 451 TAAACCAGCTTTTATGAAGATCGCTAACTGGAAGGCTGGTATCATCCCCGTCTCATATCG 510
Query 481 CAGAGTGGCATGTAAG-AGAACCGGAGGAATAAGGTTTAAATTTGAAGGAAATGGGTATT 539
|||||||||||||||| || | ||||||||||||||| ||||||||||||||||| ||||
Sbjct 511 CAGAGTGGCATGTAAGAAG-ATCGGAGGAATAAGGTTCAAATTTGAAGGAAATGGATATT 569
Query 540 GGCTACTTGTGTACGTGATGAACGTAGGTGGTGCAGGTGACATCAAGACCATGGCCGTGA 599
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 570 GGCTACTTGTGTACGTGATGAACGTAGGTGGTCCAGGTGACATCAAGACCATGGCCGTTA 629
Query 600 AAGGTAGCCGCACAGGCTGGATCAACATGAGCCATAATTGGGGAGCTTCGTACCAAGCCT 659
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 630 AAGGTAGCCGCACAGGGTGGATCAACATGAGCCATAACTGGGGAGCTTCGTACCAAGCCT 689
Query 660 TTTCTTCTCTCTACGGTCAGTCTCTCTCGTTCCGGCTCACCTCTTACACCACTCGTCAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TTTCTTCTCTCTACGGTCAGTCTCTCTCGTTCCGGCTCACCTCTTACACCACTCGTCAGA 749
Query 720 CCATTTACGCTTATAATGCTGCTCCGGCTAGCTGGAGCGCCGGCAAGACCTACCAGAGCA 779
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 750 CCATTTACGCTTATAATGCTGCTCCGGCAAGCTGGAGCGCGGGCAAGACCTACCAGAGCA 809
Query 780 AGGCTAATTTTAGCTGATTTAGGTCATATTCAATTCCGA 818
|||||||||||| || |||||||||||||||||||||||
Sbjct 810 AGGCTAATTTTAACTAATTTAGGTCATATTCAATTCCGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5