BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924700
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62940.1 | Symbols: ACOS5 | acyl-CoA synthetase 5 | chr1:233... 1681 0.0
> AT1G62940.1 | Symbols: ACOS5 | acyl-CoA synthetase 5 | chr1:23310535-23312747
FORWARD LENGTH=1648
Length=1648
Score = 1681 bits (910), Expect = 0.0
Identities = 954/976 (98%), Gaps = 0/976 (0%)
Strand=Plus/Plus
Query 633 GTCTGAAATGATCGGTCAGATCGTGACGCTTGGTTTGATCCCATTCTTTCACATTTACGG 692
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 GTCTGAAATGATCGGTCAGATCGTGACGCTTGGTTTGATCCCATTCTTTCATATTTACGG 732
Query 693 TATCGTTGGCATATGTTGCGCTACAATGAAGAATAAAGGCAAAGTTGTTGCTATGAGTCG 752
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TATCGTTGGCATATGTTGTGCTACAATGAAGAATAAAGGCAAAGTTGTTGCTATGAGTCG 792
Query 753 GTACGATCTAAGGATTTTCTTGAATGCTTTGATTGCGCATGAGGTTTCGTTTGCGCCTAT 812
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 793 GTACGATCTAAGGATTTTCTTGAATGCTTTGATTGCTCATGAGGTTTCGTTTGCGCCTAT 852
Query 813 AGTTCCGCCGATTATATTGAATCTTATTAAGAATCCGATAGTTGATGAGTTTGACCTTTC 872
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 853 AGTTCCGCCGATTATATTGAATCTTGTTAAGAATCCGATAGTTGATGAGTTTGATCTTTC 912
Query 873 GAAGCTTAAACTTCAGTCTGTTATGACTGCTGCTGCTCCTTTAGCTCCTGAGCTTCTTAC 932
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 913 GAAGCTTAAACTTCAGTCTGTCATGACTGCTGCTGCTCCTTTAGCTCCTGAGCTTCTTAC 972
Query 933 TGCCTTCGAAGCCAAGTTTCCTAACGTCCAAGTCCAAGAGGCTTATGGATTAACGGAGCA 992
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 973 TGCCTTCGAAGCCAAGTTTCCTAATGTCCAAGTCCAAGAGGCTTATGGATTAACGGAGCA 1032
Query 993 TAGTTGCATTACGTTAACTCACGGAGATCCAGAGAAAGGACAAGCAATCTCGAAACGAAA 1052
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1033 TAGTTGCATTACGTTAACTCACGGAGATCCAGAGAAAGGACAAGGAATCGCGAAACGAAA 1092
Query 1053 CTCTGTCGGTTTCATACTTCCGAATCTCGAGGTGAAGTTCATAGATCCTGACACCGGTAG 1112
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1093 CTCGGTTGGTTTCATACTTCCGAATCTCGAGGTAAAGTTCATAGATCCTGACACCGGTAG 1152
Query 1113 ATCACTCCCGAAGAACACGTCCGGTGAGCTATGTGTGAGGAGCCAATGTGTAATGCAAGG 1172
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATCACTCCCGAAGAACACTTCTGGTGAGCTATGTGTGAGGAGCCAATGTGTAATGCAAGG 1212
Query 1173 TTACTTCATGAACAAGGAAGAGACTGACAAGACAATTGATGAACAAGGTTGGCTTCACAC 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TTACTTCATGAACAAGGAAGAGACTGACAAGACAATTGATGAACAAGGTTGGCTTCACAC 1272
Query 1233 AGGAGATATAGGTTACATCGATGATGATGGAGATATCTTCATCGTTGATCGTATCAAAGA 1292
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1273 AGGAGACATAGGTTACATCGATGATGATGGAGACATCTTCATCGTTGATCGTATCAAAGA 1332
Query 1293 ACTTATTAAATACAAAGGTTTCCAGGTTGCTCCCGCCGAGCTTGAAGCTATTCTACTCAC 1352
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1333 ACTTATTAAATACAAAGGTTTTCAGGTTGCTCCGGCCGAGCTTGAAGCTATTCTACTCAC 1392
Query 1353 TCATCCATCCGTTGAAGACGTTGCCGTCGTGCCGTTACCGGACGAGGAAGCCGGGGAGAT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TCATCCATCCGTTGAAGACGTTGCCGTCGTGCCGTTACCGGACGAGGAAGCCGGGGAGAT 1452
Query 1413 TCCGGCGGCTTGCGTGGTGATAAATCCGAAAGCGACGGAGAAGGAAGAAGACATTCTCAA 1472
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1453 TCCGGCGGCTTGCGTGGTGATAAATCCGAAAGCGACAGAAAAGGAAGAAGACATTCTCAA 1512
Query 1473 CTTTGTTGCAGCAAATGTGGCTCATTACAAGAAGGTCAGAGCCGTCCATTTTGTGGATTC 1532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1513 CTTTGTTGCAGCAAATGTGGCTCATTACAAGAAGGTTAGAGCCGTCCATTTTGTGGATTC 1572
Query 1533 AATCCCCAAATCTCTCTCTGGTAAAATCATGAGGAGGCTTCTTAGAGACAAGATCCTCAG 1592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AATCCCTAAATCTCTCTCTGGTAAAATCATGAGGAGGCTTCTTAGAGACAAGATCCTCAG 1632
Query 1593 CATCAACAAGAAGTAG 1608
||||||||||||||||
Sbjct 1633 CATCAACAAGAAGTAG 1648
Score = 1070 bits (579), Expect = 0.0
Identities = 614/631 (97%), Gaps = 1/631 (0%)
Strand=Plus/Plus
Query 3 AAATTCAATCCGTTAAAAAATGGAGAGTCAAAAGCAAGAAGACAATGAATACATTTTCCG 62
||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AAATTCAATTCGTTTAAAAATGGAGAGTCAAAAGCAAGAAGATAATGAATACATTTTCCG 60
Query 63 CAGTTTGTATCCATCTGTGCCCATTCCTGACAAACTTACACTGCCTGAATTTGTGCTCCA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGTTTGTATCCATCTGTGCCCATTCCTGACAAACTTACACTGCCTGAATTTGTGCTCCA 120
Query 123 AGGAGTTGAAGAATACACAGAAAATGTGGCGTTTGTAGAAGCGGTGACCGGAAAAGCGGT 182
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 121 AGGAGTTGAAGAATACACAGAGAATGTAGCGTTTGTAGAAGCGGTGACCGGAAAAGCTGT 180
Query 183 GACGTACGGTGATGTAGTGAGGGACACAAAGAGGCTAGCCAAAGCGTTGACCTCTCTCGG 242
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GACGTACGGTGATGTAGTGAGGGACACAAAGAGGCTAGCCAAAGCGTTGACATCTCTCGG 240
Query 243 ACTAAGGAAAGGTCAAGTAATGGTTGTGGTTCTACCAAACGTCGCTGAGTATGGGGTTAT 302
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 241 ACTAAGGAAAGGTCAAGTGATGGTTGTGGTCCTACCAAACGTCGCCGAGTATGGGATTAT 300
Query 303 TGCCCTTGGCATTATGTCTGCCGGTGGAGTCTTCTCCGGTGCAAATCCGACGGCTCTTGT 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCCCTTGGTATTATGTCTGCCGGTGGAGTCTTCTCCGGTGCAAATCCGACGGCTCTTGT 360
Query 363 CTCCGAGATCAAGAAGCAAGTTGAAGCTTCCGGTGCTAGAGGAATCATCACTGATGCTAC 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCGAGATCAAGAAGCAAGTTGAAGCTTCCGGTGCTAGAGGAATCATCACTGATGCTAC 420
Query 423 TAACTATGAAAAGGTGAAAACACTAGGTTTACCGGTGATAGTGTTAGGTGAAGAGAAGAT 482
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAACTATGAAAAGGTGAAATCACTAGGTTTACCGGTGATAGTGTTAGGTGAAGAGAAGAT 480
Query 483 CGAAGGAGCAGTAAACTGGAAAGATCTTCTAGAAGCAGGAGACAAATCCGGAGATACCGA 542
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AGAAGGAGCAGTAAACTGGAAAGATCTTCTAGAAGCAGGAGACAAATGCGGAGATACCGA 540
Query 543 CAATGAAGAGATTCTTCAGACAGATCTTTGTGCACTTCCTTTTTCTTCAGGAACAACCAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CAATGAAGAGATTCTTCAGACAGATCTTTGTGCACTTCCTTTTTCTTCAGGAACAAC-AG 599
Query 603 GATTACAAAAAGGAGTAATGCTCACACATCG 633
|||||||||||||||||||||||||||||||
Sbjct 600 GATTACAAAAAGGAGTAATGCTCACACATCG 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5