BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924701
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62935.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 817 0.0
> AT1G62935.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 45 Blast hits to 45
proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa
- 6; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
29 (source: NCBI BLink). | chr1:23308880-23309410 REVERSE LENGTH=531
Length=531
Score = 817 bits (442), Expect = 0.0
Identities = 509/540 (94%), Gaps = 9/540 (2%)
Strand=Plus/Plus
Query 27 ATGATGAACATTATAATCAATGTCATGGAGATGATCTGGAGAACAATTGTTTCAACATTA 86
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1 ATGTTGAACATTATAATCAATGTCATGGAGATCATCTGGAGAACAATTGTTTCAACACTA 60
Query 87 ATGCTCTTTTTCTTCTTGAGATATTTCAATAATCCTCCAAATCCTCTTCTTATTTTCTTT 146
||||||||||||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 61 ATGCTCTTTTTCTTCTTGAGATATTTC---AA-----C-AATCCTCTTCTTCTTTTCTTT 111
Query 147 TTCCTCTGTTTGATTCTTTTCTTGCTTATCATCGATCGTAATCGCTCTGTTTATGAAGAA 206
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 112 TTCCTCTGTACGATTCTTTTCTTACTTATCATCGATCGTAATCGCTCTGTTTATGAAGAA 171
Query 207 ACCGAAGATTTCTATGTTTTGTACACTTTTCAAGAAGACAGTATGCTTGATGTTGAAACC 266
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 172 ACCGGAGATTTCTATGTTTTGTACACTTTTCAAGAAGACAATATGCTTGATGGTGAAATC 231
Query 267 ATAGACAAGAACAGAGAATGCTGTTATTTCACAAGATATTACTATGATGATTGTTTTAGC 326
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 232 ATAGACAAGAACAGAGAATGTTGTGATTTCACAAGATATTACTATGATGATTGTTTTAGC 291
Query 327 TATTATGATGGTTTTGATGAAGTTGATAATGATGGTTTTATATGGAACGATGATGAAGAT 386
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 292 TATTATGATGGTTTTGATGAAGTTGATAATGATGGTTGTATATGGAACGATGATGAAGAT 351
Query 387 TATAGCCAATGGAATCAAgatggtggtgatgatggtattgaaaaccatgatgatgatgat 446
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 352 TTTAGCCAATGTAATCAAGATGGTGGTGATGATGGTATTGAAAACCGTGATGATGATGAT 411
Query 447 aatcatgcctatggtgatgacgttgatgatgaCACCTTGACGAGCAGGATTGAAGATTAC 506
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 412 AATCATGCCTATGGTGATGATGTTGATGATGACACATTGACGAGCAGGATTGAAGATTAC 471
Query 507 ATTGCAAACGTTTACAATGGATGGAGAGAAGAGAGACGAACAGAGAAACTGTTTGTCTGA 566
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 472 ATTGCAAACGTTTACAATGGATGGAGAGAAGAGAGACGAACCGACAAATTGTTTGTCTGA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5