BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924709 Length=280 Score E Sequences producing significant alignments: (Bits) Value AT1G62860.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 344 2e-94 > AT1G62860.1 | Symbols: | pseudogene of pentatricopeptide (PPR) repeat-containing protein | chr1:23274676-23277017 REVERSE LENGTH=2342 Length=2342 Score = 344 bits (186), Expect = 2e-94 Identities = 232/253 (92%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 21 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTGATGCTGCTGCTGTTTATGCG 80 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTAATGCTGCTGCTGTTTCTGCG 60 Query 81 AGATTGTTCAGTAGGAGATTGGTTCATCGCCGCGTCGCCAAGAAAAGC-AGTAAGGTTGA 139 ||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 61 AGATTGTTCAGTACGAGATTAGTTCATCGCCGCGTCGCCAAGAAAA-CTAGTAAGGTTGA 119 Query 140 AAAGAGTATGCCTTCTTTGAGCGAAGGAGCTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 199 |||||||||||||||| |||| || | ||||||||||||||||||||||||||||||| Sbjct 120 AAAGAGTATGCCTTCTCTGAG-GA-G---CTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 174 Query 200 TGGGTTTCATTATATCAAAAGCTTTGATGATGCGATTGTTTTGTTCGATGAAATGGTTTG 259 ||| | ||||||||||| |||||| ||||||||||| | |||||||||||| |||||| | Sbjct 175 TGGATCTCATTATATCAGAAGCTTAGATGATGCGATCGATTTGTTCGATGATATGGTTAG 234 Query 260 ATCTCGTCCACTT 272 ||||||||| ||| Sbjct 235 ATCTCGTCC-CTT 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12868543744 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5