BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924709
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62860.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 344 2e-94
> AT1G62860.1 | Symbols: | pseudogene of pentatricopeptide (PPR)
repeat-containing protein | chr1:23274676-23277017 REVERSE
LENGTH=2342
Length=2342
Score = 344 bits (186), Expect = 2e-94
Identities = 232/253 (92%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 21 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTGATGCTGCTGCTGTTTATGCG 80
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTAATGCTGCTGCTGTTTCTGCG 60
Query 81 AGATTGTTCAGTAGGAGATTGGTTCATCGCCGCGTCGCCAAGAAAAGC-AGTAAGGTTGA 139
||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 61 AGATTGTTCAGTACGAGATTAGTTCATCGCCGCGTCGCCAAGAAAA-CTAGTAAGGTTGA 119
Query 140 AAAGAGTATGCCTTCTTTGAGCGAAGGAGCTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 199
|||||||||||||||| |||| || | |||||||||||||||||||||||||||||||
Sbjct 120 AAAGAGTATGCCTTCTCTGAG-GA-G---CTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 174
Query 200 TGGGTTTCATTATATCAAAAGCTTTGATGATGCGATTGTTTTGTTCGATGAAATGGTTTG 259
||| | ||||||||||| |||||| ||||||||||| | |||||||||||| |||||| |
Sbjct 175 TGGATCTCATTATATCAGAAGCTTAGATGATGCGATCGATTTGTTCGATGATATGGTTAG 234
Query 260 ATCTCGTCCACTT 272
||||||||| |||
Sbjct 235 ATCTCGTCC-CTT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12868543744
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5