BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924712 Length=2564 Score E Sequences producing significant alignments: (Bits) Value AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-... 4023 0.0 > AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like 1 | chr1:23264490-23267202 REVERSE LENGTH=2713 Length=2713 Score = 4023 bits (2178), Expect = 0.0 Identities = 2451/2581 (95%), Gaps = 26/2581 (1%) Strand=Plus/Plus Query 1 TCACACAGAGAGCAAGAGGC-ATGTCAACAGAGACTAAAGAAACCCGACCCG--A--AGA 55 ||||||| ||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 11 TCACACACAGAGCTAGA-GCTATGTCAACAGAGACTAAAGAAACCCGACCCGAAACTAAA 69 Query 56 CCCG--GA------AACCCATTCTAATTTGGATTTACCCGGTGAAGAACCTCTCGGAAAG 107 |||| || ||| ||| ||| | ||||| ||||||||||||||||||||||| || Sbjct 70 CCCGAAGACCTGGGAACTCATACTACTGTGGATGTACCCGGTGAAGAACCTCTCGGAGAG 129 Query 108 CTTATCGCTGACGACGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 167 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 130 CTTATCGCCGACGACGTGAACGAAGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 189 Query 168 TCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 227 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TCACTCTCACCGAGCCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 249 Query 228 GACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTCCTA-TCGA 286 |||||||||||||||||||||||||| |||| |||||||||||||||| ||| | |||| Sbjct 250 GACCAATCGCCATTAACGGAGCTTCAGCCTCTTCCTCTTCCTCCTCCTCTTCC-AGTCGA 308 Query 287 AACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 346 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 309 AGCACGAATCTCAGAATCGCTCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 368 Query 347 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGGGTAAGAAAACGACGCCGTAGGAA 406 |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 369 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGAGCAAGAAAAAGACGCCGTAGGAA 428 Query 407 GCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGT 466 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 429 ACGTTTCTTCACTGAGATTAACGCAAACCCAGCTTTCTCAAGAAACCGCCGCACTAGCGT 488 Query 467 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 548 Query 527 GCTCACGGAGGAAGAAATCGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGC 586 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 549 GCTCACGGAGGAAGAAATTGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAAGC 608 Query 587 TAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTG 646 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 609 TAATTACATTGTTGTAAGGAATCACATTATTGCTCTGTGGCGATCTAATGTATCGAATTG 668 Query 647 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATAC 706 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 669 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAACCTTAGTTGATAC 728 Query 707 AGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 766 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 788 Query 767 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGC 826 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 789 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCAAATGTTGTTGTTGTAGGGGC 848 Query 827 GGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGT 886 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 849 GGGTTTAGCTGGTTTGGTTGCTGCTAGACAGTTGTTGTCAATGGGGTTTAGGGTTTTGGT 908 Query 887 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGA 946 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 909 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACACGGAAGATGAAAGGTGGTGA 968 Query 947 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCC 1006 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 969 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGCGTTCTCACCGGAATTAATGGGAATCC 1028 Query 1007 GCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1066 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1029 GCTTGGGGTTTTGGCGAGGCAACTTGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1088 Query 1067 TTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATC 1126 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1089 TTTGTATCTTCCCAATGGAGAGCTTGCTGATGCTAGTGTTGATTCTAAGATTGAGGCATC 1148 Query 1127 GTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1186 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 GTTTAATAAGTTGTTGGATAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1208 Query 1187 ATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1246 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 ATCAGTTGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1268 Query 1247 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1328 Query 1307 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGAT 1366 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1329 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCGTATGAGAT 1388 Query 1367 GGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGA 1426 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1389 GGGTGGTGATCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCTTTAGCGGA 1448 Query 1427 AAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1486 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1449 AAATCTTCCAATTTTTTACGGGAGTACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1508 Query 1487 TCTTGTTTACGCAGG-AGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGT 1545 ||| |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | Sbjct 1509 TCTGGTTTACACAGGTA-ACAAAGAGTTCCACTGCGATATGGCTCTTTGCACGGTTCCAT 1567 Query 1546 TAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAG 1605 |||||||||||||||||||| |||| |||||||||||||| |||||| | |||||||||| Sbjct 1568 TAGGTGTTCTGAAGAAAGGTTCGATTGAGTTTTATCCCGAACTTCCTCATAAGAAGAAAG 1627 Query 1606 AAGCGATTCAGAGACTCGGATAT-GGATTGTTGAACAAAGTGGCAATGTTGTTTCCGTAT 1664 |||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||| | Sbjct 1628 AAGCGATTCAGAGACTTGGAT-TCGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTGT 1686 Query 1665 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCTACTAGA 1724 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 1687 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATCCGTCCACCAGA 1746 Query 1725 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1747 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1806 Query 1785 CTTGTAGCTGGTGACGCTGCAGAAAGATTTGAGTCATTGTCGCCTACTGATTCCGTTAAA 1844 ||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1807 CTTGTAGCTGGAGACGCTGCGGAAAGATTCGAGACATTGTCGCCTACTGATTCCGTTAAA 1866 Query 1845 CGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCG 1904 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1867 CGGGTCTTGCAGATACTACGCGGAATATATCACCCAAAAGGAATTGTTGTTCCTGATCCG 1926 Query 1905 GTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATAT 1964 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1927 GTTCAAGCCCTCTGTTCCAGATGGGGACAAGACAAGTTTTCATACGGTTCTTACTCATAT 1986 Query 1965 GTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGA 2024 |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 1987 GTTGCGGTCGGATCATCAGGAGATGATTACGATATTTTAGCCGAGAGTGTTGGTGATGGA 2046 Query 2025 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCC 2084 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2047 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCTACAATGCACGGAGCC 2106 Query 2085 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCA 2144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2107 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCGTCA 2166 Query 2145 TCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAA 2204 || ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 2167 TCATCGGCTTTAAATCCTAACCAGATCTGCATCGACAAAGAAGAAGAGGTAGACGAAGAA 2226 Query 2205 GAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCG 2264 |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 2227 GAAGACCGCTGTTTGGATCAGTTATTCGAGACACCCGATTTAACATTCGGGAATTTCTCA 2286 Query 2265 GTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATC 2324 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2287 GTATTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGGGTTAGGATC 2346 Query 2325 CAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAG-AAGGCAAGC 2383 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||| Sbjct 2347 CAAATGGAGAAACCCGAATCAGGTCTTTGGCTTTACGGTTTAGTGACAAGGAAG-CAAGC 2405 Query 2384 TATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2443 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2406 TATTGAGCTTGGTGAAATGGATGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2465 Query 2444 AGGTTTTGTAC-TCGTCGAAAGGAAGAGT-TTATCTCAAGAAGGAGAATCGATGATCTCT 2501 ||| |||| | | ||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 2466 AGGACTTGTTCCT-GTCGAAAGGAAGAGTCTT-TCTCAAGAAGGGGAATCGATGATCTCT 2523 Query 2502 TCACTCAAAGCTGCGAGATTGAATCGACAGATCTTTGATTAGTACTAAAATAGATTTAGA 2561 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 2524 TCACTCAAAGCTGCAAGACTGAATCGACAGATCTTTGATTAGTAGTAAAATAGATTTAGA 2583 Query 2562 T 2562 | Sbjct 2584 T 2584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127273534391 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5