BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924712
Length=2564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-... 4023 0.0
> AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like
1 | chr1:23264490-23267202 REVERSE LENGTH=2713
Length=2713
Score = 4023 bits (2178), Expect = 0.0
Identities = 2451/2581 (95%), Gaps = 26/2581 (1%)
Strand=Plus/Plus
Query 1 TCACACAGAGAGCAAGAGGC-ATGTCAACAGAGACTAAAGAAACCCGACCCG--A--AGA 55
||||||| ||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 11 TCACACACAGAGCTAGA-GCTATGTCAACAGAGACTAAAGAAACCCGACCCGAAACTAAA 69
Query 56 CCCG--GA------AACCCATTCTAATTTGGATTTACCCGGTGAAGAACCTCTCGGAAAG 107
|||| || ||| ||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 70 CCCGAAGACCTGGGAACTCATACTACTGTGGATGTACCCGGTGAAGAACCTCTCGGAGAG 129
Query 108 CTTATCGCTGACGACGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 167
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTATCGCCGACGACGTGAACGAAGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 189
Query 168 TCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 227
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCACTCTCACCGAGCCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 249
Query 228 GACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTCCTA-TCGA 286
|||||||||||||||||||||||||| |||| |||||||||||||||| ||| | ||||
Sbjct 250 GACCAATCGCCATTAACGGAGCTTCAGCCTCTTCCTCTTCCTCCTCCTCTTCC-AGTCGA 308
Query 287 AACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 346
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 309 AGCACGAATCTCAGAATCGCTCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 368
Query 347 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGGGTAAGAAAACGACGCCGTAGGAA 406
|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 369 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGAGCAAGAAAAAGACGCCGTAGGAA 428
Query 407 GCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGT 466
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 429 ACGTTTCTTCACTGAGATTAACGCAAACCCAGCTTTCTCAAGAAACCGCCGCACTAGCGT 488
Query 467 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 548
Query 527 GCTCACGGAGGAAGAAATCGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGC 586
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 GCTCACGGAGGAAGAAATTGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAAGC 608
Query 587 TAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTG 646
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 609 TAATTACATTGTTGTAAGGAATCACATTATTGCTCTGTGGCGATCTAATGTATCGAATTG 668
Query 647 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATAC 706
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 669 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAACCTTAGTTGATAC 728
Query 707 AGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 788
Query 767 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGC 826
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 789 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCAAATGTTGTTGTTGTAGGGGC 848
Query 827 GGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGT 886
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 849 GGGTTTAGCTGGTTTGGTTGCTGCTAGACAGTTGTTGTCAATGGGGTTTAGGGTTTTGGT 908
Query 887 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGA 946
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 909 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACACGGAAGATGAAAGGTGGTGA 968
Query 947 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCC 1006
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 969 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGCGTTCTCACCGGAATTAATGGGAATCC 1028
Query 1007 GCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1066
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1029 GCTTGGGGTTTTGGCGAGGCAACTTGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1088
Query 1067 TTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATC 1126
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1089 TTTGTATCTTCCCAATGGAGAGCTTGCTGATGCTAGTGTTGATTCTAAGATTGAGGCATC 1148
Query 1127 GTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1186
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GTTTAATAAGTTGTTGGATAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1208
Query 1187 ATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1246
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ATCAGTTGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1268
Query 1247 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1328
Query 1307 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1329 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCGTATGAGAT 1388
Query 1367 GGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGA 1426
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1389 GGGTGGTGATCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCTTTAGCGGA 1448
Query 1427 AAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1486
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAATCTTCCAATTTTTTACGGGAGTACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1508
Query 1487 TCTTGTTTACGCAGG-AGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGT 1545
||| |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1509 TCTGGTTTACACAGGTA-ACAAAGAGTTCCACTGCGATATGGCTCTTTGCACGGTTCCAT 1567
Query 1546 TAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAG 1605
|||||||||||||||||||| |||| |||||||||||||| |||||| | ||||||||||
Sbjct 1568 TAGGTGTTCTGAAGAAAGGTTCGATTGAGTTTTATCCCGAACTTCCTCATAAGAAGAAAG 1627
Query 1606 AAGCGATTCAGAGACTCGGATAT-GGATTGTTGAACAAAGTGGCAATGTTGTTTCCGTAT 1664
|||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 1628 AAGCGATTCAGAGACTTGGAT-TCGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTGT 1686
Query 1665 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCTACTAGA 1724
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1687 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATCCGTCCACCAGA 1746
Query 1725 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1806
Query 1785 CTTGTAGCTGGTGACGCTGCAGAAAGATTTGAGTCATTGTCGCCTACTGATTCCGTTAAA 1844
||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1807 CTTGTAGCTGGAGACGCTGCGGAAAGATTCGAGACATTGTCGCCTACTGATTCCGTTAAA 1866
Query 1845 CGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCG 1904
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1867 CGGGTCTTGCAGATACTACGCGGAATATATCACCCAAAAGGAATTGTTGTTCCTGATCCG 1926
Query 1905 GTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATAT 1964
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1927 GTTCAAGCCCTCTGTTCCAGATGGGGACAAGACAAGTTTTCATACGGTTCTTACTCATAT 1986
Query 1965 GTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGA 2024
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 1987 GTTGCGGTCGGATCATCAGGAGATGATTACGATATTTTAGCCGAGAGTGTTGGTGATGGA 2046
Query 2025 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCC 2084
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2047 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCTACAATGCACGGAGCC 2106
Query 2085 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCA 2144
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2107 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCGTCA 2166
Query 2145 TCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAA 2204
|| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2167 TCATCGGCTTTAAATCCTAACCAGATCTGCATCGACAAAGAAGAAGAGGTAGACGAAGAA 2226
Query 2205 GAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCG 2264
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2227 GAAGACCGCTGTTTGGATCAGTTATTCGAGACACCCGATTTAACATTCGGGAATTTCTCA 2286
Query 2265 GTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATC 2324
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2287 GTATTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGGGTTAGGATC 2346
Query 2325 CAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAG-AAGGCAAGC 2383
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 2347 CAAATGGAGAAACCCGAATCAGGTCTTTGGCTTTACGGTTTAGTGACAAGGAAG-CAAGC 2405
Query 2384 TATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2443
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2406 TATTGAGCTTGGTGAAATGGATGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2465
Query 2444 AGGTTTTGTAC-TCGTCGAAAGGAAGAGT-TTATCTCAAGAAGGAGAATCGATGATCTCT 2501
||| |||| | | ||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 2466 AGGACTTGTTCCT-GTCGAAAGGAAGAGTCTT-TCTCAAGAAGGGGAATCGATGATCTCT 2523
Query 2502 TCACTCAAAGCTGCGAGATTGAATCGACAGATCTTTGATTAGTACTAAAATAGATTTAGA 2561
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 2524 TCACTCAAAGCTGCAAGACTGAATCGACAGATCTTTGATTAGTAGTAAAATAGATTTAGA 2583
Query 2562 T 2562
|
Sbjct 2584 T 2584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127273534391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5