BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924719
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62760.1 | Symbols: | Plant invertase/pectin methylesterase... 745 0.0
> AT1G62760.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:23237574-23238512 REVERSE
LENGTH=939
Length=939
Score = 745 bits (403), Expect = 0.0
Identities = 474/509 (93%), Gaps = 2/509 (0%)
Strand=Plus/Plus
Query 42 CTTAGATTACATCAAAACATCATGTAACCTCACACTCTACAAAACCCTTTGCTACAACTC 101
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 432 CTTAGATTACATCAAAACATCATGTAACATTACACTCTACAAAACCATTTGCTACAACTC 491
Query 102 TCTATATCCTTACGCCTCAACAGTCCATTCCAACCCTCACAAACTCGCCGTCACCGCCCT 161
||||| |||||||||||||||| ||| |||||||||||| |||||||| |||| ||||||
Sbjct 492 TCTATCTCCTTACGCCTCAACAATCCGTTCCAACCCTCAAAAACTCGCTGTCATCGCCCT 551
Query 162 CAATCTCACCCTCTCCTCCGCCAAATCCGCCTCCAAATTCGTCAAAAACATATCTCACCG 221
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 552 CAATCTCACCCTCTCATCCGCCAAATCTGCCTCCAAATTCGTCAAAAACATATCTCACGG 611
Query 222 AGGCGGTCTAACACTTTTGGAAGCGGTTGCGGTTGCTGATTGCGTGGAAGAGATTGGAGA 281
||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 612 AGGTGGTCTAACACGTTTGGAAGTAGTTGCGGTTGCTGATTGCGTTGAAGAGATTGGAGA 671
Query 282 CTCCGTGA-TATCGCTTCAAGATTCCATAAGAGAGTTGGATTCTATCAACTATAAAGATA 340
||| |||| | |||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 672 CTCGGTGACT-TCGCTTCAAGATTCGATAAGGGAATTGGATTCTATCAACTATAAAGATA 730
Query 341 GTGCAAAGTTTGAGATGGTTATGTCGGATGTTGAGACATGGGTTAGTGCTGCTCTCACGG 400
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 GTGCAAAGTTTGAGATGGTTATGTCGGATGTTGAAACATGGGTTAGTGCTGCTCTCACGA 790
Query 401 ATGATGAAACATGTATGGATGGTTTCAGTCGAGTCAAAACGGCCGTGAAAGATTTGGTTC 460
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 791 ATGATGACACATGTATGGATGGTTTCAGTCTAGTTAAAACGGCCGTGAAAGATTTGGTTC 850
Query 461 GGCGACATGTTGTTGAGGTAGCTCGGCTGACTAGCAACGCGCTTGCTCTTATTAATATGT 520
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 851 GACGACATGTTGTTGAGGTAGCTCGGCTTACTAGCAACGCGCTTGCTCTCATTAATATGT 910
Query 521 TCGCCTCTACGGAGGAAAACTTTTCATAA 549
|||||||||| | ||||||||||| |||
Sbjct 911 ACGCCTCTACGCAAGAAAACTTTTCTTAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5