BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924726
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2521 0.0
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 538 7e-152
> AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23207090-23209913 REVERSE LENGTH=2301
Length=2301
Score = 2521 bits (1365), Expect = 0.0
Identities = 1575/1676 (94%), Gaps = 15/1676 (1%)
Strand=Plus/Plus
Query 12 GAA-ATCGAAATGCAGAGATCGATTGCGATGACGGCGAAGAGATTTCTTCATCGCAATCT 70
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAACATCGAAATGCAGAGATCGATTGCGATGACGGCGAAGAGATTTCTTCATCGCAATCT 70
Query 71 TCTTGAGAATGGTAAACCTAGAACTGCTTCTTCTCCTTCGTTTAGCCATTGCAGTTCCTG 130
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCTCGAGAATGGTAAACCCAGAACTGCTTCTTCTCCTTCGTTTAGCCATTGCAGTTCCTG 130
Query 131 TCGTTGCTCGGCACGAGCTTCTTCTAGCGTCAGTGGTGGTGATCTGCGAGAGAGATTAAG 190
|||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 131 TCGTTGCTGGGTACGAGCTTCTTCAAGCGTCAGTGGTGGTGATTTGCGAGAGAGATTAAG 190
Query 191 CAAAACTCGGCTTCGTGATATAAAGCTACATGATGCGATTAATCTGTTCAGAGAAATGGT 250
|||||||||||||||||||||||||||| | ||||||||| |||| ||||| || |||||
Sbjct 191 CAAAACTCGGCTTCGTGATATAAAGCTAAACGATGCGATTGATCTATTCAGTGACATGGT 250
Query 251 CAAGACTCGTCCCTTCCCTTCCATTGTCGATTTCAATAGATTGTTGAGTGCCATTGTTAA 310
|||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 251 CAAGTCTCGTCCCTTTCCTTCCATTGTCGATTTCAATAGATTGCTGAGTGCCATTGTTAA 310
Query 311 GA-TGAAGAAGTACGATGTTGTGATATCTCTGGGGAAGAAGATGGAAATTTTGGGGATTC 369
| |||||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||
Sbjct 311 -ATTGAAGAAGTATGATGTTGTTATCTCTTTGGGGAAGAAGATGGAAGTTTTGGGGATTC 369
Query 370 GAAATGATCTTTATACATTCAATATTGTGATTAATTGTTTTTGTTGCTGTTTTCAAGTCT 429
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 370 GAAATGATCTTTATACATTTAACATTGTGATTAATTGTTTCTGTTGCTGTTTTCAAGTCT 429
Query 430 CTCTTGCTTTATCTGTTCTTGGTAAGATGTTGAAACTTGGTTATGAGCCAGATAGAGTCA 489
|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 430 CTCTAGCTTTATCTATTCTTGGCAAGATGTTGAAACTTGGTTATGAGCCAGATAGAGTCA 489
Query 490 CGATTGGATCTCTTGTTAATGGATTTTGTCGTAGGAATAGAGTTTCTGATGCTGTATCTT 549
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CGATTGGATCTCTTGTTAACGGATTTTGTCGTAGGAATAGAGTTTCTGATGCTGTATCTT 549
Query 550 TGGTTGATAAGATGGTGGAGATCGGATATAGACCGGATATTGTTGCGTACAACGCGATCA 609
|||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| |
Sbjct 550 TGGTTGATAAGATGGTGGAGATTGGATATAAACCTGATATTGTTGCTTACAACGCGATTA 609
Query 610 TTGATAGTCTTTGCAAAACCAGACGTGTGAATGATGCTCTT-GATTTTTTCAAGGAAATT 668
||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 610 TTGATAGTCTTTGCAAAACCAAACGTGTGAATGATGCT-TTCGATTTTTTCAAGGAAATT 668
Query 669 GGAAGGAAAGGGATTCGACCGAATGTTGTTACCTACACTGCGCTTGTAAATGGTCTTTGT 728
| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 669 GAAAGGAAAGGGATTAGACCGAATGTTGTTACCTACACTGCGCTTGTTAACGGTCTTTGT 728
Query 729 AATTCTG-GTAGATGGAGCGATGCTGCTCGGCTTTTGAGAGATATGATCAAGAGGAAAAT 787
||||| | |||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 729 AATTC-GAGTAGATGGAGCGATGCTGCTCGACTTTTGAGTGATATGATCAAGAAGAAAAT 787
Query 788 TACCCCTAATGTTATTACTTATAGTGCGTTGCTCGATGCGTTTGTGAAAAACGGAAAGGT 847
|| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 788 CACTCCTAATGTGATTACTTACAGTGCGTTGCTTGATGCGTTTGTGAAAAACGGAAAGGT 847
Query 848 TTTGGAGGCTAAAGAGCTTTTTGAGGAGATGGTACGAATGTCTATTGATCCTGATATCGT 907
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTTGGAGGCTAAAGAGCTTTTCGAGGAGATGGTACGAATGTCTATTGATCCTGATATCGT 907
Query 908 GACTTACAGTTCGTTGATCAATGGGCTTTGTTTACACGATCGCATAGATGAGGCCAACCA 967
||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 908 GACTTACAGTTCGTTGATCAATGGGCTTTGTTTGCATGATCGGATAGATGAGGCTAATCA 967
Query 968 AATGTTTGATTTGATGGTAAGCAAGGGTTGTTTCCCAGATGTAGTGAGTTACAACACTCT 1027
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 968 AATGTTTGATTTGATGGTTAGCAAGGGTTGTTTAGCAGATGTAGTGAGTTACAACACTCT 1027
Query 1028 TATAAATGGATTTTGTAAGGCGAAGAGAGTAGAGGATGGGATGAAACTGTTTCGTGAGAT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TATAAATGGATTTTGTAAGGCGAAGAGAGTAGAGGATGGGATGAAACTGTTTCGTGAGAT 1087
Query 1088 GTCTCAGAGAGGATTAGTTAGCAATACAGTCACTTACAACACTCTTATCCAAGGGTTTTT 1147
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1088 GTCTCAGAGAGGATTAGTTAGCAATACGGTTACTTACAACACTCTTATCCAAGGGTTTTT 1147
Query 1148 TCAAGCAGGCGATGTTGATAAAGCTCAAGAATTTTTTAGTCAGATGGATTCTTTTGGTGT 1207
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 1148 TCAAGCAGGCGATGTTGATAAAGCTCAGGAATTTTTTAGTCAGATGGATTTTTTTGGTAT 1207
Query 1208 CTCTCCTGACATTTGGACCTATAACATTTTGCTAGGTGGTCTTTGTGACAACGGGTTGCT 1267
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1208 CTCTCCTGATATTTGGACCTATAACATTTTGTTAGGTGGTCTTTGTGACAACGGGGAGCT 1267
Query 1268 AGAGAAAGCGTTGGTGATATTTGAAGATATGCAAAAGAGTGAAATGGATCTTGATATTGT 1327
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1268 AGAGAAAGCACTGGTGATATTTGAAGATATGCAAAAGAGGGAAATGGATCTTGATATTGT 1327
Query 1328 CACATATACTACTGTTATCCAAGGAATGTGCAAGACTGGTAAGGTGGAAGATGGTTGGGG 1387
|||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||| |
Sbjct 1328 CACATATACTACTGTTATCCGAGGAATGTGCAAGACTGGTAAGGTTGAAGAAGCTTGGAG 1387
Query 1388 TTTATTTTGTAGCCTCAGCCTTAAAGGATTGAAGCCTGATATTGTAACATACACTACAAT 1447
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1388 TTTATTTTGTAGCCTCAGCCTCAAAGGATTGAAGCCAGATATTGTAACATACACTACAAT 1447
Query 1448 GATGTCAGGGTTGTGTACAAAAGGCCTACAACATGAAGTTGAAGCACTGTATACAAAAAT 1507
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1448 GATGTCAGGGTTGTGTACGAAAGGCCTACTACATGAAGTTGAAGCACTGTATACAAAAAT 1507
Query 1508 GAAACAAGAGGGGCTTATGAAAAATGACAGCATGCTATGCCTTGGAGATGGTGACATAAC 1567
|||||||||||||||||||||||||||| ||| | || || | ||||||||||||||
Sbjct 1508 GAAACAAGAGGGGCTTATGAAAAATGACTGCA--C---GC-TTAGCGATGGTGACATAAC 1561
Query 1568 CATATCAGCTGAACTCATCAAGAAAATGTTGAGCTGTGGCTATGCACCGTCCTTGCTTGG 1627
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TTTATCAGCTGAACTTATCAAGAAAATGTTGAGCTGTGGCTATGCACCGTCCTTGCTTAA 1621
Query 1628 AGACATCAAACCTGTGGG-ATGCAAAAAAGCTCTGTCTCTCTTGTAATTGTTACTG 1682
||| || ||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1622 AGATATAAAATCTG-GGGTATGCAAAAAAGCTCTGTCTCTCTTGTAATTGTTACTG 1676
> AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308683 FORWARD LENGTH=2150
Length=2150
Score = 538 bits (291), Expect = 7e-152
Identities = 727/935 (78%), Gaps = 40/935 (4%)
Strand=Plus/Plus
Query 606 ATCATTGATAG-TCTTTGCAA-AACCAGACGTGTGAATGATGCTCTTGATTTTTTCAAGG 663
||||||||| | ||||||||| | || | ||||||||||| || || | |||| |
Sbjct 781 ATCATTGAT-GCTCTTTGCAACTA-CAAAAACGTGAATGATGCACTCAATCTGTTCACTG 838
Query 664 AAATTGGA-AGGAAAGGGATTCGACCGAATGTTGTTACCTAC-ACTGCGCTTGTAA-ATG 720
||| |||| | ||||| ||| |||| ||||||||||||||| ||| | || ||| ||
Sbjct 839 AAA-TGGATAACAAAGGAATTAGACCAAATGTTGTTACCTACAACT-CCCTCATAAGAT- 895
Query 721 GTCTTTGTAATT-CTGGTAGATGGAGCGATGCTGCTCGGCTTTTGAGAGATATGATCAAG 779
| |||||||||| | || |||||||| |||||| |||| || | || |||||||| ||
Sbjct 896 GCCTTTGTAATTAC-GGAAGATGGAGTGATGCTTCTCGACTACTCAGTGATATGATTGAG 954
Query 780 AGGAAAATTACCCCTAATGTTA-TTACTTAT-AGTGCGTTGCTCGATGCGTTTGTGAA-A 836
|||||||| | || |||| || | |||| | || || ||| | ||||| ||||||||
Sbjct 955 AGGAAAATCAATCCAAATG-TAGTCACTT-TCAGCGCATTGATTGATGCATTTGTGAAGG 1012
Query 837 AACGGAAAGGTTTTGGAGGCTAAAGAGCTT-TTTGAGGAGATGGTAC-GAATGTCTATTG 894
|| || ||| || | |||||| ||| || | || |||||| | | || |||||| |
Sbjct 1013 AA-GGGAAGCTTGTAGAGGCT-GAGAAATTGTACGACGAGATGAT-CAAAAGGTCTATAG 1069
Query 895 ATCCTGATATCGTGACTTACAGTTCGTTGATCAATGGGCTTTGTTTACACGATCGCATAG 954
|||||||||| | ||||| ||||| ||||||||||| ||||| | |||||||| |||
Sbjct 1070 ATCCTGATATTTTCACTTATAGTTCACTGATCAATGGGTTTTGTATGCACGATCGTTTAG 1129
Query 955 ATGAGGCCAACCAAATGTTTGATTTGATGGTAAGCAAGGGTTGTTTCCCAGATGTAGTGA 1014
| |||||||| || |||||||| |||||| | ||||||| ||||||||| | |||||||
Sbjct 1130 ACGAGGCCAAGCACATGTTTGAGTTGATGATTAGCAAGGACTGTTTCCCAAACGTAGTGA 1189
Query 1015 GTTACAACACTCTTATAAATGGATTTTGTAAGGCGAAGAGAGTAGAGGATGGGATGAAAC 1074
|||||| ||||||||||| |||||||||||||| ||||||||||| || || ||| |||
Sbjct 1190 CTTACAATACTCTTATAAAGGGATTTTGTAAGGCTAAGAGAGTAGAAGAAGGTATGGAAC 1249
Query 1075 TGTTTCGTGAGATGTCTCAGAGAGGATTAGTTAGCAATACAGTCACTTACAACACTCTTA 1134
| || || ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1250 TCTTCCGCGAGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAACACTCTTA 1309
Query 1135 TCCAAGGGTTTTTTCAAGCAGGCGAT-GTTGATAAAGCTCAAGAATTTTTTAGTCAGATG 1193
|||||||||| |||||||| || ||| || |||| |||||| || | || | |||||
Sbjct 1310 TCCAAGGGTTATTTCAAGCTGGAGATTGT-GATATGGCTCAAAAAATATTCAAAAAGATG 1368
Query 1194 G-ATTCTTTTGGTGT-CTCTCCTGACATT-TGGACCTATAACATTTTGCTAGGTGGTCTT 1250
| || || ||| || | |||| || || | || || | |||| || ||| ||| ||
Sbjct 1369 GTAT-CTGATGGCGTGC-CTCCCGATATCATA-ACATACAGCATTCTGTTAGATGGACTC 1425
Query 1251 TGTGACA-ACGGGTTGCTAGAGAAAGCGTTGGTGATATTTGAAG-ATATGCAAAAGAGTG 1308
||| | | | ||| ||| |||||||| |||||| |||| || | || |||||||||||
Sbjct 1426 TGTAA-ATATGGGAAGCTGGAGAAAGCATTGGTGGTATTCGA-GTATCTGCAAAAGAGTA 1483
Query 1309 AAATGGATCTTGATATTGT-CACATATACTACTGTTATCCAAGGAATGTGCAAGACTGGT 1367
||||||| | ||||||| | |||||||| || | | || |||| ||||||||| | ||
Sbjct 1484 AAATGGAACCTGATATT-TACACATATAATATTATGATTGAAGGGATGTGCAAGGCAGGG 1542
Query 1368 AAGGTGGAAGATGGTTGGGGTTTATTTTGTAGCCTCAGCCTTAAAGGATTGAAGCCTGAT 1427
|||||||||||||| |||| | |||||||||||||||||||||||||| |||||||| ||
Sbjct 1543 AAGGTGGAAGATGGGTGGGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAAT 1602
Query 1428 ATTGTAACATACACTACAATGATGTCAGGGTTGTGTACAAAAGGCCTACAAC-ATGAAGT 1486
| ||| |||||||||||||| ||||| || |||| ||||| || || | ||||
Sbjct 1603 GTAATAATTTACACTACAATGATATCAGGATTTTGTAGGAAAGGTTTA-AAGGAAGAAGC 1661
Query 1487 TGAAGCACT-GTATACAAAAATGAAACAAGAGGGG 1520
|| || || || || | |||||||| |||| |||
Sbjct 1662 AGATGC-CTTGTTTAGAGAAATGAAAGAAGATGGG 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5