BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924746
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 1110 0.0
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 974 0.0
AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 917 0.0
AT1G61970.1 | Symbols: | Mitochondrial transcription terminati... 773 0.0
AT1G62490.1 | Symbols: | Mitochondrial transcription terminati... 638 0.0
AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 396 4e-109
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 1110 bits (601), Expect = 0.0
Identities = 1126/1368 (82%), Gaps = 81/1368 (6%)
Strand=Plus/Plus
Query 58 AGTTACATAAATGGCGTAACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTG 117
|||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AGTTTCAGAAAGGGCGTGACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTG 275
Query 118 CTTTTTCC-A---ATTC-CTTC---TCCT-CTGCTGCTGATGTGAGCCTTAGAGATGGTC 168
||||||| | |||| |||| | || ||||||||||||||||| |||||||| |||
Sbjct 276 TTTTTTCCAATTCATTCTCTTCTGTTGCTACTGCTGCTGATGTGAGCTTTAGAGATAGTC 335
Query 169 GAAAAGGTAAGAACTTTACAATCTCTTACCTTGTTGATTCATTGGGTTTACCTAT-AAAG 227
|||||||||| |||||||| |||||||||| |||||||||||||||||| || | ||||
Sbjct 336 GAAAAGGTAACAACTTTACTGTCTCTTACCTCGTTGATTCATTGGGTTTAGCT-TCAAAG 394
Query 228 CTCGCAGGATCGATTTCAAGGAAAGTCAGGTTT-GAGAACAAGGCCAATCCCGATTCTGT 286
||||||| |||||| || | |||||||| |||| |||||||||| |||||| ||| | ||
Sbjct 395 CTCGCAGAATCGATCTCGATGAAAGTCA-GTTTCGAGAACAAGGGCAATCCTGATACAGT 453
Query 287 TCTGAGTCTTCTGAGAAGTCATGGGTTCACAGATTCTCAGATCTCCACCATGATTACGAA 346
||||| |||||| |||||||||| ||||||||||||||||||||||| ||| ||| || |
Sbjct 454 TCTGAATCTTCTTAGAAGTCATGAGTTCACAGATTCTCAGATCTCCAGCATCATTTCGGA 513
Query 347 TTACCCACCATTGCTTATATTAGATGCTGAGAAA-TCACTTGCTCCCAAGTTTCAGTTTT 405
||| ||| |||||||| || ||||||||| ||| ||||||| ||||||| ||| |||
Sbjct 514 TTATCCAACATTGCTTGTAGCAGATGCTGA-AAATTCACTTGGTCCCAAGCTTCTGTTGA 572
Query 406 TGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTCAGATTGTTTCTACAGTTCCGGAAA 465
||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 573 TGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGATTGTTTCTAAAGTTCCTAAAA 632
Query 466 TCTTGGGAAAGAGAGGGGACAAAACTCTCAGCTTATGCTATGATTTTGTCAAAGAGAGTT 525
|||| |||| || ||||||||||| | || || || ||||||| | |||||||||| ||
Sbjct 633 TCTTAGGAATGAAAGGGGACAAAAGTATCGGCAGATACTATGATATCGTCAAAGAGA-TT 691
Query 526 -TAGTAGCGGATAAGAGTTCCAAGTTGGAAAAGTTGTGTCATTCTTTGCCACA-GG--GT 581
||| |||||||||||| |||||||| |||||| |||||||||||||||| | || ||
Sbjct 692 ATAGAAGCGGATAAGAGCTCCAAGTTCGAAAAGCTGTGTCATTCTTTGCCTGAGGGTAGT 751
Query 582 AAGCAGGAGGATAAAATCAGAAATGTATCGGTTTTGAGAGAATTGGGCATGCCTCACAA- 640
||||||||| |||||||||| ||||||| |||||||||||| ||||| ||||||| ||
Sbjct 752 AAGCAGGAGAATAAAATCAGGAATGTATTGGTTTTGAGAGATTTGGGTGTGCCTCA-AAG 810
Query 641 GTTGTTATTCTCCTTGCTTACATCCGT-TGGTCAACC-TG--T-ATGTGGAAAAG-ATAG 694
|||||||||||| |||| | | | | | | || ||| || | |||||||||| | ||
Sbjct 811 GTTGTTATTCTCATTGC-T-C-TTC-TCTAATC-ACCATGTCTGCTGTGGAAAAGAAAAG 865
Query 695 ATTTGATGCATCCCTCAAGAAGATAGTTGAGATGGGTTTTGATCCGACCAC-CGCAAAGT 753
||||| | ||| ||||| ||| | |||| ||||||||||||||| ||||| | ||||||
Sbjct 866 -TTTGAAGAATCACTCAACAAGGTTGTTGGGATGGGTTTTGATCCCACCACTC-CAAAGT 923
Query 754 TTGTCAAAGCTCTATACGTTGTTTAC-AATTTGAGTGACAAAACAATAGAAGAAAAAGTC 812
|||| ||||| ||| | |||||||| | ||||| ||||||| | |||||||||| ||
Sbjct 924 TTGTGGAAGCTTTATGCATTGTTTACGGA-TTGAGCGACAAAAGACTAGAAGAAAACTTC 982
Query 813 CATATTTACAAAAGGTTAGGCTTTGCTGTGGAA-GATGTATGGGTAA-TCTTCAAGAAGT 870
|| | ||||| || || ||||| |||| || |||||||||| || | ||||||||||
Sbjct 983 AATGTCTACAAGAGATTTGGCTTAACTGT-AAACGATGTATGGG-AACTTTTCAAGAAGT 1040
Query 871 GGCCTTTCTCT-TTGAAATTCTCAGAGGAA-AAGATAACTCAGACGA-TTGAAACCTTGA 927
| ||| || | ||| || ||| || ||| | ||||| |||||| | ||||| |||| |
Sbjct 1041 GCCCTGCCTTTCTTG-GATACTCTGA-GAATAGGATAATTCAGAC-ATTTGAAGCCTTAA 1097
Query 928 AGATGTGTGGTTTGAACGAAAACGAGGTCCT-TCAAGTATTGAAGAAGTATCCGC-AGT- 984
||| ||||||| || |||| | ||||| | || ||| || |||||| |||| | | |
Sbjct 1098 AGAGGTGTGGTCTGTGCGAAGATGAGGTATTGTC-AGTGTTCAAGAAGAATCCACTA-TG 1155
Query 985 TTATACGT-ATGTCACAGCAGAAGATATTGAACTTCATTGAAACATTTTTAAGTC-TAGG 1042
| ||||| | ||| ||||| |||||||||||| ||| ||||||||| | || | ||||
Sbjct 1156 CT-TACGTGCT-TCAGAGCAGCAGATATTGAACTCCATGGAAACATTTAT-AGGCTTAGG 1212
Query 1043 ATTCAGCAGAGATGAGTTT-ACGATGATAGTCAAATGCTTTCCT-ATGTGCTTTGGAT-T 1099
||||||||||||||||||| | ||||| ||||| ||| ||||| | |||| |||||| |
Sbjct 1213 ATTCAGCAGAGATGAGTTTGTC-ATGATGGTCAAGTGCCTTCCTCA-GTGCATTGGATAT 1270
Query 1100 GTCTGGAGAGACGGTGAAAAAGAAGACTGAGTTTGTGGTGAAGAAGACT-AATTGGTCAC 1158
|||| ||||| |||||| |||||||||||||||||||||||||||| | |||||| |||
Sbjct 1271 -TCTGCAGAGATGGTGAAGAAGAAGACTGAGTTTGTGGTGAAGAAGA-TGAATTGGCCAC 1328
Query 1159 TAAAGGACACTACTTCGTTCCCTCAGGTATTTGGATACAGCCTGGAGAAGAGGATTGTAC 1218
| |||| || ||||| ||||||||||||| ||||||| ||| |||||||||||| ||| |
Sbjct 1329 TTAAGGTCATTACTTTGTTCCCTCAGGTACTTGGATATAGCATGGAGAAGAGGACTGTCC 1388
Query 1219 CAAGGTGTAACGTAATCAAAGCACTCATGTCCAGAGGATTGCTTGGAAGCGAACTCCCTT 1278
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1389 CAAGGTGTAATGTAATCAAAGCTCTCATGTCCAAAGGATTGCTTGGAAGCGAACTCCCTC 1448
Query 1279 CAATGGCGTCTGTCTTGGCATGTAACGATCATG-CTTTTGTTAAAA-GGTATGTGAG--G 1334
||||||||||||| |||||||||| |||||| | | || |||||| |||||||| | |
Sbjct 1449 CAATGGCGTCTGTTTTGGCATGTACCGATCA-GACCTTC-TTAAAAAGGTATGTG-GTTG 1505
Query 1335 AAGCA-GAATGACAAGGAGCTTGTGGCT-GAGTTGATGGCTATTTTCA 1380
| ||| || ||| || |||| ||| || ||||||||| |||| ||||
Sbjct 1506 A-GCATGA-TGA-AA--AGCTGGTG-CTTGAGTTGATGTCTATCTTCA 1547
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 974 bits (527), Expect = 0.0
Identities = 1132/1410 (80%), Gaps = 98/1410 (7%)
Strand=Plus/Plus
Query 20 CATGTATTCTCTGATACTCCATGGAAGAA-GAT-CTACTGAGTTACATAAATGGCGTAAC 77
|||||||||| |||||||||||||||||| | | ||| |||| || ||||||||| |
Sbjct 229 CATGTATTCTGTGATACTCCATGGAAGAAGGTTGGTAC--AGTTGCAGAAATGGCGTCA- 285
Query 78 TTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCC--TTC- 134
||| | | || | | || ||||||||| | || |||||||| |||||| |||
Sbjct 286 TTT-GAGATT---T---G-TTGTGCAAAATGGA---TCAGCTTTTTCTAATTCCTATTCT 334
Query 135 TC--CT-CTGCTGCTGATGTGAGCCT-TAGAGATGGTCGAAAAGGT-AAGAACTTTACAA 189
|| || |||| ||||| |||| || ||||||||||||||| || |||||||||||
Sbjct 335 TCTGCTAGTGCTACTGATTTGAG-CTCAAGAGATGGTCGAAAA-GTGAAGAACTTTACTG 392
Query 190 TCTCTTACCTTGTTGATTCATTGGGTTTACCTATAAAGCTCGCAGGATCGATTTCAAGGA 249
|||||||||| |||||||||||||||||| ||| ||| ||||| | ||| || |||| ||
Sbjct 393 TCTCTTACCTCGTTGATTCATTGGGTTTAGCTACAAAACTCGCTGAATCAATCTCAAAGA 452
Query 250 AAGTCAGGTTT-GAGAACAAGGCCAATCCCGATTCT-GTTCTGAGTCTTCTGAGAAGTCA 307
|||||| |||| | |||||||| |||||| |||| | |||||||||||| | |||||| |
Sbjct 453 AAGTCA-GTTTCGTGAACAAGGGCAATCCTGATT-TAGTTCTGAGTCTTTTTAGAAGTTA 510
Query 308 TGGGTTCACAGATTCTCAGATCTCCACCATGATTACGAATTA-CCCACCATTGCTTATAT 366
|||||||||| ||||||||||||||| ||| |||||| |||| || | ||||||| ||
Sbjct 511 TGGGTTCACAAATTCTCAGATCTCCAGCATCATTACGGATTATCCTA-GATTGCTTCTAA 569
Query 367 TAGATGCTGAGAAATCACTTGCTCCCAAGTTTCAGTTTTTGCAGTCCAGAGGAGCTTCAA 426
||||||||||||||||||||| | |||| ||||||||||| |||| |||||||||||||
Sbjct 570 TAGATGCTGAGAAATCACTTGATATCAAGCTTCAGTTTTTGGAGTCTAGAGGAGCTTCAA 629
Query 427 GCTCTGAGCTCACTCAGATTGTTTCTACAGTTCCGGAAATCTTGGGAAAGAGAG-GGGAC 485
|| ||||||||||||||||||||||||||||||| |||| ||||||| || || ||||
Sbjct 630 GCCCTGAGCTCACTCAGATTGTTTCTACAGTTCCTAAAATATTGGGAATGAAAGAGGGA- 688
Query 486 AAAACTCTCAG-CTTATGCTATGATTTTGTCAAAGAGAGTT-TAGTAGCGGATAAGAGTT 543
|| |||| || | || ||||||||| |||||||||| || ||| ||| ||||||||||
Sbjct 689 AAGTCTCT-AGGCAGATACTATGATTTCGTCAAAGAGA-TTATAGAAGCAGATAAGAGTT 746
Query 544 CCAAGTTGGAAAAGTTGTGTCATTCTTTGCCACAGGGTAAGCAGG-AGG--A-TAAAATC 599
|||||| |||| |||||||| |||||||| ||| ||| ||| ||| | |||||||
Sbjct 747 CCAAGTACGAAACTTTGTGTCAACCTTTGCCAGAGGCTAAT-AGGCAGGGTAATAAAATC 805
Query 600 AGAAATGTATCGGTT-TTGAGAGAATTGGGCATGCCTCACAAGTTGTTATTCTCCTTGCT 658
|||||||| |||||| || ||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 806 AGAAATGTTTCGGTTCTT-AGAGACTTGGGTGTGCCTCAGAAGTTGTTATTCTCCTTGCT 864
Query 659 TACATC-C-GTTGGTCAACCTGTATGTGGAAAAGATAGATTT-GATGCATCCCTCAAGAA 715
|||| | | || |||||||| ||||||||||| | |||| || | ||| ||||||||
Sbjct 865 --CATCTCTGATGCCCAACCTGTTTGTGGAAAAGAAA-ATTTTGAAGAATCACTCAAGAA 921
Query 716 GATAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCAAAGCTCTATACGT-TG 774
| | |||||||||||||||||||| |||||| ||||||||||| ||||||| || | ||
Sbjct 922 GGTTGTTGAGATGGGTTTTGATCCAACCACCTCAAAGTTTGTCCAAGCTCT-TAGGGCTG 980
Query 775 TTTACA-ATTTGAGTGACAAAACAATAGAAGAAAAAGTCCATATTTACAAAAGGTTAGGC 833
|||||| ||| | ||||||||||||||||||| ||| || | || ||| |||| |||
Sbjct 981 TTTACAGATTC-ACCGACAAAACAATAGAAGAAAGAGTTAATGTGTATAAAGGGTTCGGC 1039
Query 834 TTTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCTTTCTCTTTGAA-ATTCTC 892
|||||||||||||||||||||| ||| |||||||| || |||| || |||||| | | ||
Sbjct 1040 TTTGCTGTGGAAGATGTATGGGCAATGTTCAAGAAATGTCCTTACTTTTTGAATAGT-TC 1098
Query 893 AGAGGAA-AAGATAACTCAGACGATTGAAACCTTGAAGATGTGTGGTTTGAA-CGAAAAC 950
||| || ||||| |||||| ||||||||| |||||| |||||| | | |||| ||
Sbjct 1099 GGAG-AAGAAGATTGGTCAGACAATTGAAACCCTGAAGAAGTGTGGACT-ACTCGAAGAC 1156
Query 951 GAGGTCCT-TCAAGTATTGAAGAAGTATCCGCAGTTTATACGTA-TGTCACAGCAGAAGA 1008
|||||| | ||| || ||||| ||||||||||||| || ||| | ||| |||||||||
Sbjct 1157 GAGGTCATCTCA-GTGTTGAAAAAGTATCCGCAGTGCATTGGTACT-TCAGAGCAGAAGA 1214
Query 1009 TATTGAACTTCATTGAAACATTTTTAAGTCTAGGATTCAGCAGAGATGAGTTTACGATGA 1068
||||||||| |||||||| |||| || | ||||| ||||||||||||||||| | | |
Sbjct 1215 TATTGAACTCCATTGAAATATTTCTAGGCCTAGGCTTCAGCAGAGATGAGTTCATAACAA 1274
Query 1069 TAGTCAAATGCTTTCCT-A-TGTGCTT-TGGATTGTCTGGAGAGACGGTGAAAAAGAAGA 1125
| || || |||||||| | ||| ||| | || |||| |||||||||||| |||||||
Sbjct 1275 TGGTTAAGCGCTTTCCTCAGTGT-CTTATT--TTATCTGCAGAGACGGTGAAGAAGAAGA 1331
Query 1126 CTGAGTTTGTGGTGAAGAAGACT-AATTGGTCACTAAAGGACACTACTT-CGT-TCCCT- 1181
|||||||||||||||||||| | |||||| |||| ||||| | || | ||| |
Sbjct 1332 TTGAGTTTGTGGTGAAGAAGA-TGAATTGGCCACTGAAGGATG-TGGTTTCAAATCC-TA 1388
Query 1182 CAGGTATTTGGATACAGCCTGGAGAAGAGGATTGTACCAAGGTGTAACGTAATCAAAGCA 1241
| |||| ||||||||| |||||||||||||| ||| ||||||||||| || || ||||
Sbjct 1389 C-GGTACTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGTGTAATGTTATTGAAGCT 1447
Query 1242 CTCATGTCCAGAGGA-TT---G----CTT-GGAAGCGAACTCCCTTCAATGGCGTCTGTC 1292
|||||||| | | || || | | ||||| ||||||||| ||||| |||||||
Sbjct 1448 CTCATGTCAAAAAGACTTCTCGGAGACACAGGAAGTGAACTCCCTCCAATGTCGTCTGTT 1507
Query 1293 TTGGCATGTAAC-GATCATGCTT-TTGTTAAAA-GGTATGTGAGGAAGCA-GAATGACAA 1348
|||| ||||| | ||| | | || || |||||| ||||||||||||| || | ||||||
Sbjct 1508 TTGGTATGTA-CTGATGA-G-TTGTTCTTAAAAAGGTATGTGAGGAACCATGG-TGACAA 1563
Query 1349 GGAGCTTGTGGCT-GAGTTGATGGCTATTT 1377
|||||| ||| || ||||||||| ||||||
Sbjct 1564 GGAGCTGGTG-CTTGAGTTGATGACTATTT 1592
> AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902150-22903837 FORWARD
LENGTH=1688
Length=1688
Score = 917 bits (496), Expect = 0.0
Identities = 1124/1413 (80%), Gaps = 100/1413 (7%)
Strand=Plus/Plus
Query 20 CATGTATTCTCTGATACTCCATGGAAGAAGATCTACT-GAGTTACATAAA-TGGCGTAAC 77
||||||| ||||||||| |||||||||||| | | | ||||||| ||| || | |||
Sbjct 89 CATGTATGCTCTGATACACCATGGAAGAAGGT-TGGTCCAGTTACAGAAATTGTC-TAA- 145
Query 78 TTT-AGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCTC 136
||| || ||||| || || ||||| | | |||||||| ||||||||||||||
Sbjct 146 TTTCAGAGTTTC-----AG---TT-CAAAACGGA---TCTGCTTTGTCCAATTCCTTCTC 193
Query 137 -----CT-CTGCTGCTGATGTGAGCCTTAGAGATGGTCGAAAAGGTAAGAACTTTACAAT 190
|| || |||||||| || ||||| |||| | | |||||||| ||||||||| |
Sbjct 194 TTTTGCTAGTGTTGCTGATGCGACCCTTATAGATAGCCTTAAAGGTAACAACTTTACAGT 253
Query 191 CTCTTACCTTGTTGATTCATTGGGTTT-ACCTATAAAGCTCGCAGGATCGAT-TTCAAGG 248
||||||||| ||||||||||||||||| ||| | ||||||||||| |||||| | ||| |
Sbjct 254 CTCTTACCTAGTTGATTCATTGGGTTTAACC-ACAAAGCTCGCAGAATCGATCTCCAA-G 311
Query 249 AAAGTCAGGTTTGAGAACAAGG-CCAATCCCGATTCTGTTCTGAGTCTTCTGAGAAGTCA 307
||||| || || ||| | ||| ||||| |||||||||||||||||||| | |||| |
Sbjct 312 AAAGTAAGCTTCGAGGA-GAGGAGAAATCCGGATTCTGTTCTGAGTCTTCTTACAAGTTA 370
Query 308 TGGGTTCACAGATTCTCAGATCTCCACCATGATTACGAAT-TACCCACCATTGCTTATAT 366
|||||||||| | |||||||| || | || ||||| || ||||||| ||||||| ||
Sbjct 371 TGGGTTCACAAAGTCTCAGATTTCAAGTATCATTAC-TATCTACCCACGATTGCTTGCAT 429
Query 367 TAGATGCTGAGAAAT-CACTTGCTCCCAAGTTTCAGTTTTTGCAGTCCAGAGGAGCTTCA 425
||||||||||||||| || ||||||||||| |||||| | ||||||||||||||||||||
Sbjct 430 TAGATGCTGAGAAATCCA-TTGCTCCCAAGCTTCAGTCTCTGCAGTCCAGAGGAGCTTCA 488
Query 426 AGCTCTGAGCTCACTCAGATTGTTTCTACAGTTCCGGAAATCTTGGGAAAGAGAGGGGAC 485
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||
Sbjct 489 AGCTCTGAGCTCACTCAGATTGTTTCTACTGTTCCTAAAATCTTGGGGAAGAGAGGGCAC 548
Query 486 AAAACTCTCAGCT-TATGCTATGATTTTGTCAAAGAGAGTT-TAGTAGCGGATAAGAGTT 543
||| || | | || ||| ||||||||| |||||||| | || ||| ||| ||||||||||
Sbjct 549 AAATCTATAA-CTGTATACTATGATTTCGTCAAAGACA-TTATAGAAGCTGATAAGAGTT 606
Query 544 CCAAGTTG-GAAAAGTTGTGTCATTCTTTGCCACAGGGTAAGCAGGAGGA-TAAAATCAG 601
| | ||| |||||||| ||||||||||| ||||||||||| || || || ||| |||||
Sbjct 607 CTA-GTTACGAAAAGTTATGTCATTCTTTTCCACAGGGTAA-CAAGAAGAATAAGATCAG 664
Query 602 AAATGTATCGGTTTTGAGAGAATTGGGCATGCCTCA-CAAGTT-GTTATTCTCCTT-GCT 658
|||| | || ||||||||||||||||| || |||| | ||| ||||||| |||| |||
Sbjct 665 AAATATCTCTGTTTTGAGAGAATTGGGTGTGGCTCAGC--GTTTGTTATTC-CCTTTGCT 721
Query 659 TACATC-C-GTTGGTCAACCTGTATGTGGAAAAGATAGATTTGATGCATCCCTCAAGAAG 716
|||| | | ||| |||||||| ||||| ||||| |||||||| | ||| |||||||||
Sbjct 722 --CATCTCAGATGGCCAACCTGTCTGTGGTAAAGAAAGATTTGAAGAATCTCTCAAGAAG 779
Query 717 ATAGTTGAGATGGGTTTTGATCCG-ACCACCGCAAAGTTTGTCAAAGCTCTAT-ACGTTG 774
| ||||||||||||||||||||| | || ||||||| || ||||||| | |||
Sbjct 780 GTTGTTGAGATGGGTTTTGATCCGGAG-ACTACAAAGTTCGTTGAAGCTCTGCGA-GTTA 837
Query 775 TTTACAATTTGAGTGACAAAACAATAGAAGAAAAAGTCCATATTTACAAAAGGTTAGGCT 834
||||| | ||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 838 TTTACCGTATGAGTGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTAGGCT 897
Query 835 TTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCTTTCTCTTT-GAAATTCTCA 893
||| ||||| |||||||||| |||||||||||||||||||| || ||| | || ||||
Sbjct 898 TTGGTGTGGCTGATGTATGGGCAATCTTCAAGAAGTGGCCTT-CTTTTTTGTCATACTCA 956
Query 894 GAGGAA-AAGATAACTCAGACGATTGAAACC-TTGAAGATGT-GTGGTTTGAACGAAA-A 949
||| || ||||||||||| || |||||||| || |||| || ||||| || ||| |
Sbjct 957 GAG-AAGAAGATAACTCATACTTTTGAAACCCTT-AAGA-GTTGTGGTCTGCTT-AAACA 1012
Query 950 CGAGGTCCT-TCAAGTATTGAAGAAGTATCCGCAGTTTATACGTATGT-CACAGCAGAAG 1007
||||||||| | | | ||||||||| |||| | | || || | | || ||||||||
Sbjct 1013 CGAGGTCCTGTTAT-TGTTGAAGAAGCATCCAAAATGCATTTGT-TCTTCAGAGCAGAAG 1070
Query 1008 ATAT-TGAACTTCATTGAAACATTTTTAAGTCTAGGATTCAGCAGAGATGAGTTTACGAT 1066
|| | |||||| ||| |||||||| ||| | |||||||||||||||||||||||| ||||
Sbjct 1071 AT-TGTGAACTCCATAGAAACATTCTTAGGCCTAGGATTCAGCAGAGATGAGTTTGCGAT 1129
Query 1067 GATAGTCAAATGCTTTCCT-ATGTGCTTTGGATTGT-CTGGAGAGACGGTGAAAAAGAAG 1124
||| ||||| | | |||| | |||| ||| | | | ||| ||||| ||||| |||||
Sbjct 1130 GATGGTCAAGCGATATCCTCA-GTGCATTG-ACTATACTGCTGAGACAGTGAAGAAGAAA 1187
Query 1125 ACTGAGTTTGTGGTGAAGAAGACT-AATTGGTCACTAAAGGACACTACTT-CGTTCCCTC 1182
||||||||| | |||||||| | | |||||| ||||| ||| | | || || ||||||
Sbjct 1188 ACTGAGTTTATTGTGAAGAATA-TGAATTGGCCACTAGAGG-CTTTGGTTTCGATCCCTC 1245
Query 1183 AGGTATTTGGATACAGCCTGGAGAAGAGGATTGTACCAAGGTGTAACGTAATCAAAGCAC 1242
|||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||| | |
Sbjct 1246 AGGTATTTGGATACAGCCTGGAGAAGAGAACTGTCCCAAGGTGTAATGTAATCAAAACTC 1305
Query 1243 TCATGTCCAGAGGATTGCTTGGAAG-CG-AACT----CCCTTC-AATGGCGTCTGTCTTG 1295
|||| || | |||| || | | ||| || || | ||| || |||| | ||||| ||
Sbjct 1306 TCATCTCAAAAGGACTGAT-GAAAGACGGAAGTGAAGCCCCTCCAATGTCATCTGTTTTA 1364
Query 1296 GCATGTAACGATCATGCTTTTGTTAAA-AGGTATGTGAGGAAGCAGAATGACAAGGAGCT 1354
|| ||| |||||| || ||| |||| |||||||||| |||||| |||||| |
Sbjct 1365 ACAAGTACCGATCAGGCGTTT-TTAAGGAGGTATGTGATGAAGCAC---GACAAG----T 1416
Query 1355 TGTGG-C-TGAGTTGATGGCTATTTTCATTGGA 1385
|| | | ||||||||||||||| |||| ||||
Sbjct 1417 TG-GCACCTGAGTTGATGGCTATCTTCACTGGA 1448
> AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904486-22907630 FORWARD
LENGTH=2848
Length=2848
Score = 773 bits (418), Expect = 0.0
Identities = 727/871 (83%), Gaps = 41/871 (5%)
Strand=Plus/Plus
Query 20 CATGTATTCTCTGATACTCCATGGAAGAA-GAT-CTACTGAGTTACATAAATGGCGTAAC 77
||||||| ||||||||||||||||||||| | | ||| |||| || |||||| |||||
Sbjct 227 CATGTATGCTCTGATACTCCATGGAAGAAGGTTGGTAC--AGTTGCAGAAATGGTGTAAC 284
Query 78 TTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCTTTTTCCAATTCCTTCTCC 137
|||||| |||| || ||||||| | | || | || ||||||| |||||||
Sbjct 285 TTTAGTCTTTC-----AG----TGCAAAAGGCA-TCAC--CTACATCCAATTTCTTCTCC 332
Query 138 TCTG---CTGCTG-ATG--TGAG-CCTTAGAGATGGTCGAAAAGGTAAGAACTTTACAAT 190
|||| |||||| || |||| || ||||| |||||||||||| || ||||||||| |
Sbjct 333 TCTGCTTCTGCTGCGTGTTTGAGTCC-TAGAGTTGGTCGAAAAGGAAACAACTTTACAGT 391
Query 191 CTCTTACCTTGTTGATTCATTGGG-TTTACCTATAAAGCTCGCAGGATCGATTTCAAGGA 249
|||||||||||||||||||||||| || ||| | ||| ||||| | ||| |||||| |||
Sbjct 392 CTCTTACCTTGTTGATTCATTGGGCTTAACC-ACAAAACTCGCTGAATCCATTTCACGGA 450
Query 250 AAGTCAGGTTTGAGAACAAGGCCAATCCCGATTCTGTTCTGAGTCTTCTGAGAAGTCATG 309
| || || || ||| ||||| |||||| ||||||||||||| |||| ||| ||||||||
Sbjct 451 AGGTTAGCTTCGAGGACAAGAACAATCCTGATTCTGTTCTGAATCTTTTGACAAGTCATG 510
Query 310 GGTTCACAGATTCTCAGATCTCCACCATGATTACGAATTACCCACCA-TTGCTTATATTA 368
||||||||| |||||||||||||||||| |||| | |||||||| || ||||||||| |
Sbjct 511 GGTTCACAGGTTCTCAGATCTCCACCATCATTAGGGATTACCCA-CAGTTGCTTATAGCA 569
Query 369 GATGCTGAGAAATCACTTGCTCCCAAGTTTCAGTTTTTGCAGTCCAGAGGAGCTTCAAGC 428
||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 570 GATGCTGAGAAATCACTTGGTCCCAAGCTTCAGTTTTTGCAGTCTAGAGGAGCTTCAAGC 629
Query 429 TCTGAGCTCACTCAGATTGTTTCTACAGTTCCGGAAATCTTGGGAAAGAGAGGGGACAAA 488
||||| ||||| ||||||||||| ||||||||||||| |||||||||| |||| |||||
Sbjct 630 TCTGAAATCACTGAGATTGTTTCTTCAGTTCCGGAAATATTGGGAAAGAAAGGGCACAAA 689
Query 489 ACTCTCAGCTTATGCTATGATTTTGTCAAAGAGAGTTTAGTAGC-GGATAAGAGTTCCAA 547
||| ||||| ||| ||||||||| ||||||| | || | || || |||||||||||
Sbjct 690 ACTATCAGCGTATACTATGATTTCATCAAAGACA-CTT--T-GCTTGAGAAGAGTTCCAA 745
Query 548 GTTGGAAAAGTTGTGTCATTCTTTGCCACAGGGTAAGCAGGAGGATAAAATCAGAAATGT 607
| |||||||| ||||||||||||||||||||||| | |||| | || |||||||||||
Sbjct 746 GAACGAAAAGTTATGTCATTCTTTGCCACAGGGTAATCTGGAGAACAAGATCAGAAATGT 805
Query 608 ATCGGTTTTGAGAGAATTGGGCATGCCTCACAAGTTGTTATTCTCCTTGCTTA-CATCCG 666
||||||||| ||||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct 806 ATCGGTTTTAAGAGAATTGGGAATGCCTCACAAGTTGTTATTCTCCTTGCTCATC-TCCG 864
Query 667 TTGGTCAACCTGTATGTGGAAAAGATAGATTTGATGCATCCCTCAAGAA-GATAGTTGAG 725
| | |||||||||||||||||||| | |||||| | | |||||||||| | | ||||||
Sbjct 865 ATAGCCAACCTGTATGTGGAAAAGAAAAATTTGAAGAAACCCTCAAGAAAGTT-GTTGAG 923
Query 726 ATGGGTTTTGATCCGACCACCGCAAAGTTTGTCAAAGCTCTATACGTTGTTTACAATTTG 785
|||||||||||||| |||||| ||||||||||| |||||||| | ||| ||||||| ||
Sbjct 924 ATGGGTTTTGATCCTACCACCTCAAAGTTTGTCGAAGCTCTACAAGTTATTTACAAAATG 983
Query 786 AGTGACAAAACAATAGAAGAAAAAGTCCATATTTACAAAAGGTTAGGCTTTGCTGTGGAA 845
| || |||||||| ||||||||||||||| | || ||||| |||||||||| ||||| |
Sbjct 984 AACGAGAAAACAATCGAAGAAAAAGTCCATCTCTATAAAAGCTTAGGCTTTGATGTGGGA 1043
Query 846 GATGTATGGGT-AA-TCTTCAAGAAGTGGCC 874
||||||||| | || | || || ||||||||
Sbjct 1044 GATGTATGG-TCAAGTTTTAAA-AAGTGGCC 1072
> AT1G62490.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:23130405-23131533 REVERSE
LENGTH=1005
Length=1005
Score = 638 bits (345), Expect = 0.0
Identities = 497/568 (88%), Gaps = 19/568 (3%)
Strand=Plus/Plus
Query 463 AAA-TCTTGGGAAAGAGAGGGGACAAAACTCTCAGCTTATGCTATGATTTTGTCAAAGAG 521
||| |||||||||| |||||| |||||||||||||||||| ||||||||| || ||||||
Sbjct 451 AAACTCTTGGGAAAAAGAGGGCACAAAACTCTCAGCTTATACTATGATTTCGTTAAAGAG 510
Query 522 AGTTTAGTAGCGGATAAGAGTTCCAAGT-TGGAAAAGTTGTGTCATTCTTTGCCACAGGG 580
||||||| ||| ||||||||||| |||| | |||| || ||||| ||||| ||||||||
Sbjct 511 AGTTTAGAAGCAGATAAGAGTTCTAAGTAT-GAAACTTTATGTCAGTCTTTTCCACAGGG 569
Query 581 TAAGCAGGAGGATAA-AATCAGAAATGTATCGGTTTTGAGAGAATTGGGCATGCCTCACA 639
||| | |||| | || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 570 TAATCTGGAGAACAAGAA-GAGAAATGTATCGGTTTTAAGAGAATTGGGAATGCCTCACA 628
Query 640 AGTTGTTATTCTCCTTGCTTACATCCGTTGGTCAACCTGTATGTGGAAAAGATAGATTTG 699
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 629 AGTTGTTATTCCCCTTGCTTATATCCGTTGGTCAACCTGTATGTGGAAAAGATAGATTTA 688
Query 700 ATGCATCCCTCAAGAAGATAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCA 759
|| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATACGTCTCTCAAGAAGGTAGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCA 748
Query 760 AAGCTCTATACGT-TGTTTAC-AATTTGAGTGACAAAACAATAGAAGAAAAAGTCCATAT 817
||||||| |||| | || || || | || |||||||||||||||||||||||| || |
Sbjct 749 AAGCTCTCCACGTATCTT-ACGAAAT-GAACGACAAAACAATAGAAGAAAAAGTCAATGT 806
Query 818 TTACAAAAGGTTAGGCTTTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCTTT 877
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 807 CTACAAAATGTTAGGCTTTGCTGTGGAAGATGTATGGGTAATCTTCAAGAAGTGGCCATA 866
Query 878 CTCTTTGAAATTCTCAGAGGAAAAGATAACTCAGACGATTGAAACCTTGAAGATGTGTGG 937
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 867 CTCTTTGAAATACTCAGAGGAAAAGATTACTCAGACGATTGAAACCTTGAAGATGTGCGG 926
Query 938 TTTGAACGAAAACGAGGTCCTTCAAGTATTGAAGAAGTATCCGCAGTTTATACGTA-TGT 996
| | | ||| | | |||||||||| |||||||||||||| || || ||||||| | |
Sbjct 927 TCT-A-CGA----G-G-TCCTTCAAGTTTTGAAGAAGTATCCTCAATTCATACGTACT-T 977
Query 997 CACAGCAGAAGATATTGAACTTCATTGA 1024
| |||||| |||||||| ||| |||||
Sbjct 978 GAGAGCAGAGGATATTGAGCTTAATTGA 1005
Score = 429 bits (232), Expect = 4e-119
Identities = 309/344 (90%), Gaps = 14/344 (4%)
Strand=Plus/Plus
Query 1 GAGATTTGACTGGTTCTGACATGTATTCTCTGATACTCCATGGAAGAAGATCTACT-GAG 59
||||||||||||||| || |||| ||||||||||||||||||||||||||||| | |||
Sbjct 101 GAGATTTGACTGGTTATGTGATGTGTTCTCTGATACTCCATGGAAGAAGATCTA-TCGAG 159
Query 60 TTACATAAATGGCGTAACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TTACATAAATGGCGTAACTTTAGTGTTTCAGTGAAGCTTTTGCAAAATGTATTCTCTGCT 219
Query 120 TTTTCCAATTCCTTCTCC--T----CT-G--CTGCTG---ATGTGAGCCTTAGAGATGGT 167
|||||||||||||||||| | || | |||||| |||||||||||| |||| ||
Sbjct 220 TTTTCCAATTCCTTCTCCACTGTTGCTAGTGCTGCTGCTGATGTGAGCCTTATAGATAGT 279
Query 168 CGAAAAGGTAAGAACTTTACAATCTCTTACCTTGTTGATTCATTGGGTTTACCTATAAAG 227
| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 280 CAAAAAGGTAAGAACTTTACAGTCTCTTACCTCGTTGATTCATTGGGTTTACCTAAAAAG 339
Query 228 CTCGCAGGATCGATTTCAAGGAAAGTCAGGTTTGAGAACAAGGCCAATCCCGATTCTGTT 287
||||| | ||||||||||| |||| | || || ||| ||||||||||||| |||||||||
Sbjct 340 CTCGCTGAATCGATTTCAAAGAAATTTAGATTCGAGGACAAGGCCAATCCTGATTCTGTT 399
Query 288 CTGAGTCTTCTGAGAAGTCATGGGTTCACAGATTCTCAGATCTC 331
||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 400 CTGAGTCTTTTGAGAAGTCATGGGTTCACAGTTTCTCAGATCTC 443
> AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915745-22917330 FORWARD
LENGTH=1586
Length=1586
Score = 396 bits (214), Expect = 4e-109
Identities = 503/637 (79%), Gaps = 41/637 (6%)
Strand=Plus/Plus
Query 265 ACAAGGCCAATCCCGATTCTGTTCT-GAGTCTTCTGAGAAGTCATGGGTTCACAGATTCT 323
|||||| ||| | ||||| ||||| || |||||| |||||| |||||||||| ||||||
Sbjct 338 ACAAGGGAAATTCTGATTCCGTTCTGGA-TCTTCTCAGAAGTTATGGGTTCACTGATTCT 396
Query 324 CAGATCTCCACCATGATTACGAATTACCCACCATTGCTTATATTA-GATGCTGAGAAATC 382
|||||||||| ||| || | || | | || | |||||||| | ||| || || |||
Sbjct 397 CAGATCTCCAGCATCATCAGGAGTGATTCAAGAGTGCTTATA-GACAATGATGCGACATC 455
Query 383 ACTTGCTCCCAAGTTTCAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTCA 442
|||| | | ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 456 CCTTGGTTCAAAGCTTCAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCACTGA 515
Query 443 GATTGTTTCTACAGTTCCGGAAATCTTGGGAAAGAGAG-GGGACAAAACTCTCAGCTTAT 501
| ||||||| |||||||| |||||||||| ||||||| ||| |||| |||||||| ||
Sbjct 516 GGTTGTTTCCACAGTTCCTAAAATCTTGGGGAAGAGAGAGGG-CAAATCTCTCAGCAGAT 574
Query 502 GCTATGATTTTGTCAAAGAGAGTT-TAGTAGCGGATAAGAGTTCCAAGT-TGGAAAAGTT 559
|||||||| |||||| | || ||| ||| |||||||||||||||| || ||||| |
Sbjct 575 ATTATGATTTCATCAAAGTCA-TTATAGAAGCTGATAAGAGTTCCAAGTATG-AAAAGAT 632
Query 560 GTGTCATTCTTTGCCACAGGGTAAGCAGGAGGATAAAATCAGAAATGTATCGGTTTTGAG 619
| |||||||||| |||||||||| || || || ||||||| | | |||||||||
Sbjct 633 ATCTCATTCTTTGGCACAGGGTAA-CA--AG-AT-----CAGAAATATCTTGGTTTTGAG 683
Query 620 AGAATTGGGCATGCCTCACAAGTTGTTATT-CTCCTTGCTTA-CATCCGT-TGGTCAACC 676
|||| | ||| ||||||| ||| |||| | || ||||| | | ||| | | || ||
Sbjct 684 AGAACTAGGCGTGCCTCAAAAGCGGTTACTGCTT-TTGCTCATC-TCCAAATCG-CAGCC 740
Query 677 TGTATGTGGAAAAGATA-GATTTGATGCATCCCTCAAGAAGATAGTTGAGATGGGTTTTG 735
||| ||||||||||| | | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 741 TGTTTGTGGAAAAGAAAAG-TTTGATGCATCACTCAAGAAGGTAGTTGAGATGGGTTTTG 799
Query 736 ATCCGACCACCGCAAAGTTTGT-CAAAGCTCTATACGT-TG-TTTAC-AATTTGAGTGAC 791
|||| |||||| ||| |||||| || ||| | | | | || ||||| || | ||| |||
Sbjct 800 ATCCAACCACCTCAACGTTTGTGCAC-GCT-T-TGCATATGCTTTACCAAAT-GAGCGAC 855
Query 792 AAAACAATAGAAGAAAAAGTCCATATT-TACAAAAG-GTTAGGCTT-TGCTGTGGAAGAT 848
||||| || ||||||||| ||| | | || | ||| || ||| || | |||| || |||
Sbjct 856 AAAACGATTGAAGAAAAAATCCG-AGTCTATAGAAGTGT-AGGTTTCT-CTGTTGATGAT 912
Query 849 GTATGGGTAATCTTCAAGAAGTGGCCTTTCTCTTTGA 885
||||||| ||| |||||||||||||| ||||||||
Sbjct 913 GTATGGGCAATGTTCAAGAAGTGGCCACGCTCTTTGA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5