BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924757
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62410.1 | Symbols: | MIF4G domain-containing protein | chr... 627 7e-179
> AT1G62410.1 | Symbols: | MIF4G domain-containing protein | chr1:23092915-23093869
FORWARD LENGTH=672
Length=672
Score = 627 bits (339), Expect = 7e-179
Identities = 503/579 (87%), Gaps = 24/579 (4%)
Strand=Plus/Plus
Query 211 AGCGTGTGACATCCCTTATTGTCGACAAAGCTGTCCTTGA---GACCTTTTGTCCTATGT 267
||||| ||||| |||||||| |||||||||| |||||||| ||||||||| |||||||
Sbjct 32 AGCGTTTGACAACCCTTATTTTCGACAAAGCAGTCCTTGAGCCGACCTTTTGCCCTATGT 91
Query 268 ACGCTCAATTGTG-TTGTGATATCCACGACAAAATGCCTAGTTTTCCACCTTCAGAGCCT 326
||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| ||||
Sbjct 92 ACGCTCAATTGTGCTT-TGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCT 150
Query 327 ATGACTGGTGAGATCTCATTTCGAA-A-GGTTTTGCTGAATACATGTCAAAATGTGTTTG 384
| ||||| |||||||||| ||| || | |||||||||||| ||||||||||| |||||||
Sbjct 151 AAGACTGATGAGATCTCA-TTC-AAGAGGGTTTTGCTGAACACATGTCAAAAGGTGTTTG 208
Query 385 AGGGAACAGACGAGTTGAGTGAGGAGATTAGAAACATGAATGCGCTAGATCAGAAGGCAG 444
|| |||| ||||| || ||||||||||||||||| ||||| |||| ||||||| |||| |
Sbjct 209 AGAGAACTGACGACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCG 268
Query 445 AACGGGAAGACAAAGTAAAACTGTCGAACCTCCGGACTCTAGGAAATCTTCG-TTTGGTT 503
||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 269 AACGGGAAGACGAAGTAAGACTGTTGAACCTCCGGACTCTAGGAAATCTTCGTTTTTG-T 327
Query 504 GGTGAGCTTTTTCT-AACGCGGAAGCTGATGATAGAAAATATTGTTTTCA-ACATTGTTC 561
|||||||||||| | || |||| | || ||| |||||| ||||||| | ||||| ||
Sbjct 328 GGTGAGCTTTTTTTGAA-GCGG-A--TGTTGACAGAAAAGGTTGTTTT-AGCCATTGGTC 382
Query 562 AGAAGCTTTTGGAGGATGCTGAGAAAATGGGTCCATCAGAGGGACAAATTGTAGCTATTT 621
||||||||||||||||||||||| ||||| |||||||||||| | ||||| |||||||||
Sbjct 383 AGAAGCTTTTGGAGGATGCTGAGCAAATGTGTCCATCAGAGGAAAAAATTATAGCTATTT 442
Query 622 GTCTCTTTCTCAACACTGTTAGCAAAAAGCTATATGAATCAAGGTTGAACTCAAAACAGA 681
|||||||||||||||||||| ||||||||| | ||| || | ||||||||||||| ||
Sbjct 443 GTCTCTTTCTCAACACTGTTGGCAAAAAGC--T-TGATTC-A--TTGAACTCAAAACTGA 496
Query 682 TGAACGAGATTTTCAGACGTTTAGAGAATCTGTCAAATCATCCTCAATTGGTTATAAGCA 741
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 497 TGAACGAGATTTTAAGACGTTTAAAGAATCTGTCAAATCATCCTCAATTGGTTATGAGCT 556
Query 742 TGCGATTTATGGTTCAGAATATGATCCATTTGCACTCCA 780
| |||| |||||| ||| || ||||||||||||||||
Sbjct 557 TAAGATTAATGGTTGGGAAGATCATCCATTTGCACTCCA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5