BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924771
Length=368
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:75... 169 2e-41
> AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:7524342-7526160
FORWARD LENGTH=1819
Length=1819
Score = 169 bits (91), Expect = 2e-41
Identities = 215/270 (80%), Gaps = 27/270 (10%)
Strand=Plus/Plus
Query 122 CATGGATCTACTCTCCGTGTAGCGTATCAAGGAGTTCTC-GGCGTGTATTTTTGAAGCTA 180
|||||||||||||| ||||| |||||||||||||||| | || | ||| | |||||
Sbjct 667 CATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTC-CGGGAGCGTA-CTCCGAAGCGG 724
Query 181 CCACCGGAAAAGCATATTCGAAA-TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCG 239
|| |||||||||| || | ||| || |||| ||||| |||||||||||||| ||||||
Sbjct 725 CCGCCGGAAAAGCTTA-CCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCG 783
Query 240 TTTCAGGCGGTGGAGCTTTGGATCGCCGATCGT-CTTGTTTTGCCAATCGA-AAC-CT-- 294
||||||||||||||||||||||||||||||||| || ||| | ||| | || ||| ||
Sbjct 784 TTTCAGGCGGTGGAGCTTTGGATCGCCGATCGTGCT-GTTCTCCCAGTTGAGAACTCTCT 842
Query 295 ----------A---A-AGAA-TTACGATCTCCTCCTC-GTCACCATCTTCACATCGTCGG 338
| | |||| ||||||||| |||||| |||||| ||| |||||||||||
Sbjct 843 CGGTGGTTCGATTCATAGAAATTACGATCTTCTCCTCCGTCACCGTCTCCACATCGTCGG 902
Query 339 CGAGGTTTAGATCCCGGTTCACCACTGTCT 368
|| ||| ||||||||||||||||||||||
Sbjct 903 AGAAGTTCAGATCCCGGTTCACCACTGTCT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17292105656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5