BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924774
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62280.1 | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:2300714... 1749 0.0
> AT1G62280.1 | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007147-23008585
REVERSE LENGTH=1365
Length=1365
Score = 1749 bits (947), Expect = 0.0
Identities = 1118/1202 (93%), Gaps = 6/1202 (0%)
Strand=Plus/Plus
Query 1 CTCTTTTTCATCGATAAACCGAGATGGAAATTCCTAGTCAAGAAATTCATATCAAAATTG 60
|||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||| |
Sbjct 23 CTCTTTTTCATCGATAAACCAAGATGGAAATTCCGAGGCAAGAAATTCATATCGAAATCG 82
Query 61 ATAACCCAATATCTAGTAGCAAAGAGTTAAAAACTGACCTCGCTGATGCTAACCCCGTTG 120
||||| ||||| | ||||| |||||||| ||||||| ||| ||||||||||| |||||||
Sbjct 83 ATAACTCAATACCGAGTAGTAAAGAGTTTAAAACTGGCCTAGCTGATGCTAAACCCGTTG 142
Query 121 TCTTGATGTCCGTC-TTGCGTAGTCTCCACGCGGGCTATTTCAGAATTAGCCTCTCTGTG 179
|||||||||||| | ||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 143 TCTTGATGTCCG-CTTTGCGTAGTCTCCACGCGGGCTATTTCAGGATAAGCCTCTCTCTT 201
Query 180 TGCAGCCAAGCTCTACTGTGGAAGATAATGATCGCGCCTGATTCACCGAGCATGTCTCAT 239
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 202 TGCAGCCAAGCTCTTCTGTGGAAGATAATGATCGCGCCTGAGTCACCGAGCATGTCTCAT 261
Query 240 TTGCATAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ATGCACAGCAAACTCCCATCTATGGCGTTCCATCTCTTGTGGTACTTAGCACTTGTAACA 321
Query 300 CAAGTGTCACTATGTTTTTTGTATGCCTTAAAGTGTATTTTCTTATTTGACATGGTAAAG 359
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||| |||
Sbjct 322 CAAGTGTCACTCTGTTTTTTGTATGCCTTGAAGTGCATTTTCTTCTTTGACAAGGTGAAG 381
Query 360 GAAGAGTTCTTGCACTATATTGGAGTGAACTATCTTTATGCTCCATCCATTTCATGGCTT 419
|||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct 382 GAAGAGTTCTTGCACTATATCGGAGTGAACTATCTCTACGCTCCATCTATTTCATGGCTT 441
Query 420 CTCTTGCTTCAATCAGCTCCGATGATGGAACCAAACAGCGTTTTGTATCAAACACTATTC 479
||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 442 CTCATGCTTCAATCAGCTCCAATGATGGAACCAAATAGCGTTTTGTATCAGACACTATTC 501
Query 480 TGGGTGTTTGCTGTTCCAGTCTTCACACTAGACACAAAGCTTTATGGCCAGTGGTTCACA 539
||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 502 TGGATCTTTGCTGTTCCAGTCTTGACACTAGACATAAAGCTTTATGGCCAGTGGTTCACA 561
Query 540 ACAGAGAAAAGGTTCTTGTCGATGCTAGCAAACCCCGCAAGCCAAGTATCCGTAATCGCA 599
|| ||||| || || |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 562 ACGGAGAAGAGATTTTTGTCGATGCTAGCAAACCCGGCAAGCCAAGTATCGGTAATCGCA 621
Query 600 AACCTCGTGGCTGCACGAGGAGCAGCAGAAATGGGTTGGAATGAGTGTGCTCTATGCATG 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 AACCTCGTGGCTGCACGAGGAGCAGCAGAGATGGGTTGGAATGAGTGTGCTCTATGCATG 681
Query 660 TTCTCCCTCGGAATGGTTCACTATTTGGTTATATTTGTCACCCTCTATCAACGGTTACCA 719
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 682 TTCTCACTCGGAATGGTTCACTATTTGGTTATCTTTGTCACCCTCTATCAACGCTTACCG 741
Query 720 GGCGGAAACAACTTCCCAACCAAGTTAAGGCCAATTTTCTTCTTGTTCTTTGCTGCACCA 779
|| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 742 GGAGGAAACAACTTCCCAGCCAAGTTAAGGCCAATTTTCTTCTTGTTCGTCGCTGCACCA 801
Query 780 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACCTTTGATGCCGTAGCGAAAATG 839
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 802 GCCATGGCAAGTCTAGCCTGGAACTCTATTTGTGGAACTTTTGATGCCGTAGCGAAGATG 861
Query 840 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTTTGTAGGCCAAATCTTTTTAAG 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 862 TTGTTCTTCCTTTCACTTTTCATCTTCATGTCCCTGGTCTGTAGGCCAAATCTTTTCAAG 921
Query 900 AAATCAATGAAAAGATTCAATGTTGCATGGTGGGCTTACTCGTTCCCCCTCACTTTTCTT 959
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 922 AAATCAATGAAAAGATTCAATGTCGCGTGGTGGGCTTACTCGTTCCCACTCACTTTTCTT 981
Query 960 GCGCTAGACTCAGTTAAGTATGCGCAAGAGGTGAAAGA-CCAGGTCGGTTCTGGCTTTAT 1018
||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 982 GCGTTAGACTCGGTTCAGTATGCGCAAGAGGTGAAAGATCC-GGTCGGTTCTGGCTTAAT 1040
Query 1019 GCTTATCTTCTCATCCATCTCAGTTTTAATCTTCCTTGGTATGATGGTACTGACAGCAGC 1078
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1041 GCTTATCTTCTCATCTATCTCAGTTTTGATCTTCCTCGGTATGATGGTACTGACAGCAGC 1100
Query 1079 AAACAGCAATCGACTACTCAGACGTGATCAC-GTCCTCGGTTCTGCTACAGATCAAAAAG 1137
|||||||||| |||||||||||| |||| | || || |||||||||||||||| |||||
Sbjct 1101 AAACAGCAATAGACTACTCAGACACGATC-CTGTTCTTGGTTCTGCTACAGATCCAAAAG 1159
Query 1138 ACAAACAAATAACATTGTCGCTCAATGTGACTAACCAAAGCTAGTCTACACTTGAGATAG 1197
||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 1160 ACAAACAAAAAACATTGTCGCTCAATGCGACTAACCAAAACTAGTCTACCCTTGAGATAG 1219
Query 1198 AA 1199
||
Sbjct 1220 AA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5