BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924778

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   514    3e-145


> AT1G62225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G62000.1); Has 
41 Blast hits to 41 proteins in 5 species: Archae - 0; Bacteria 
- 2; Metazoa - 1; Fungi - 2; Plants - 36; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22989550-22990341 
REVERSE LENGTH=792
Length=792

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 415/480 (86%), Gaps = 14/480 (3%)
 Strand=Plus/Plus

Query  1    AGAAAACAAAAAGGAGAG------AGATGAATGCTaaaaaaaTTCTTGTGCTTCTTTTGA  54
            ||||||||||||||||||      ||||||||||||  ||  || |||| ||||| ||||
Sbjct  35   AGAAAACAAAAAGGAGAGACATAAAGATGAATGCTATTAAGTTTGTTGTACTTCTCTTGA  94

Query  55   TTGGAGTTGTGTGTACCACTGTTGGTGCAATTAGGCAGCTCGAAG-AAGGATCCAAAGAG  113
            |||||||||| |||  || |||||||||||||||||| |||| || || |||||||||||
Sbjct  95   TTGGAGTTGTATGTGTCAATGTTGGTGCAATTAGGCAACTCG-AGAAAAGATCCAAAGAG  153

Query  114  ACCGAATTAGGCGTCTCTATTCCCAAAGCTACCAAAGGC------GCTGAGTTTACTGTT  167
            ||||||||| |||||||| ||||||||||||||||||||      ||||| ||||| |||
Sbjct  154  ACCGAATTAAGCGTCTCTCTTCCCAAAGCTACCAAAGGCGTTGGAGCTGAATTTACAGTT  213

Query  168  ACTATATATACTCAGTCTATCGGTGATGGCAATGGCTATGCTGATGCTAAAATAAAGGGT  227
            ||| | |||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct  214  ACTGTTTATACTCAGTCTATAGGTGATGGCAATGGCTTTGGTGATGCTAAAATAAAGGGT  273

Query  228  CGCAAAGATTCCAGCAGCAGTGCAAATGGAAGCGGCTATGGAACTACCAGCGGATTTGTC  287
            ||||||| ||||||||||| ||||| |||||||||||  |||| ||| || |||| ||||
Sbjct  274  CGCAAAGGTTCCAGCAGCAATGCAATTGGAAGCGGCTCCGGAATTACTAGTGGATATGTC  333

Query  288  ATTGCGAAGGGTCCCAACGCAACAGCTTTTTCTAGGAGTACTGCTTTTGGTCGAGGCCGT  347
            ||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||  
Sbjct  334  ATTGCAAAGGGTCCCAACGCAACAGCTTTTTCTAGGAGTATTGCTTTCGGTCTAGGCCAA  393

Query  348  GCTGATGCTGCAGCGGGTCGCAAAGGTGCCACCGCCAAAGGAAACGGTGCTGGAGGTGGC  407
            ||| |||||| |||||||||||||||||| |||||||||||||| |||  |||| |||||
Sbjct  394  GCTAATGCTGTAGCGGGTCGCAAAGGTGCAACCGCCAAAGGAAATGGTTTTGGACGTGGC  453

Query  408  ACAACTGTTACATATGGCAGCACCGGGCCTAAACCGTGAGGTGATCGTGCTCATTTCTCC  467
            |  |||  | ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  454  ATTACTACTGCATTTGGCAGCACCGGGCCTAAACCGTGAGGTGATCATGCTCATTTCTCC  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5