BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924788
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 745 0.0
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 743 0.0
AT1G61960.1 | Symbols: | Mitochondrial transcription terminati... 704 0.0
AT1G61970.1 | Symbols: | Mitochondrial transcription terminati... 580 9e-165
AT1G62055.1 | Symbols: | pseudogene, hypothetical protein | ch... 505 6e-142
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 745 bits (403), Expect = 0.0
Identities = 818/1012 (81%), Gaps = 54/1012 (5%)
Strand=Plus/Plus
Query 146 TGGTC-AAAAAGG-TCAGATTTTCACTATCTCTTACCTCATTGATTCATTGGGTTTAACC 203
||||| |||| || | || |||| || ||||||||||| |||||||||||||||| |||
Sbjct 147 TGGTCGAAAAGGGTTGAG-TTTT-TCTGTCTCTTACCTCGTTGATTCATTGGGTTT-ACC 203
Query 204 -GCAAACCTCGCTGAATCGATCTC-AAGAAAAGTAAGCTTCGAGGA-GAGGAGAAATCCT 260
||| |||| ||||||||||| ||| ||||| ||||||||||| | | | ||||||
Sbjct 204 TAAAAAGGTCGCAGAATCGATCTCAAAG-AAAGTCAGCTTCGAGGACAAAG-GCAATCCT 261
Query 261 GACTCTGTTCTGAATCTTTTTAGAAGTTACGGATTCACAGATTCTCAGATCGCAAGCATC 320
|| |||||||||| ||| || |||||| | || ||||| |||||||||||| ||||||||
Sbjct 262 GATTCTGTTCTGAGTCTATTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCAAGCATC 321
Query 321 ATTACTGATTATCCACGATTGCTTA-TAG-TAGATGCTAAGAAATCTCTTGGTCACAAGC 378
||||| |||||||||| ||||| || ||| | |||||| ||||||| |||||| |||||
Sbjct 322 ATTACGGATTATCCACAATTGC-TAGTAGCT-GATGCTGAGAAATCAATTGGTCCCAAGC 379
Query 379 TTCAAGTTT-TGCAGTCTAGAGGAGTTTCAAGCTCTGAGCTCACTGAGACTGTTTCTAAA 437
||| ||||| ||||||| ||||||| |||||| |||||||||||| | | ||| |||| |
Sbjct 380 TTC-AGTTTCTGCAGTCCAGAGGAGCTTCAAGGTCTGAGCTCACTCATATTGTATCTACA 438
Query 438 GTTCCTAAAATCTT-GGCAATGAAAGGGGACAAAACTATAAGCAGATACTATGATTTCGT 496
|||||| ||||||| || || || ||||||||||||||| |||| |||||||||||| ||
Sbjct 439 GTTCCTGAAATCTTGGGGAA-GAGAGGGGACAAAACTATCAGCATATACTATGATTTTGT 497
Query 497 CAGAGAGATTATCGAAGCGGGTAAGAGTTCTAAGTTCGAAAAGTTATGTCAATCTATGCC 556
| ||||||||| ||||||| ||||||||| |||||||||||||||||||| ||| ||||
Sbjct 498 TAAAGAGATTATAGAAGCGGATAAGAGTTCCAAGTTCGAAAAGTTATGTCATTCTTTGCC 557
Query 557 ACAGGGTA-T--GCAAGAGAATAAAATCCGAAAT-TTATCT-GTTTTGAGAGAACTT-GG 610
| |||||| | ||| ||||| |||||| ||||| || | | |||||||||||| || ||
Sbjct 558 AGAGGGTAGTAAGCAGGAGAACAAAATCAGAAATGTT-T-TGGTTTTGAGAGAA-TTGGG 614
Query 611 CGTGCCTCAGAGGTTATTATTCCCTTTGCTCGTCTCTGATCGTAAACTTGTATGTGGAAA 670
|| ||||| ||||| || ||||| ||||| | ||||||| ||| ||| ||||||||
Sbjct 615 TGTTCCTCAAAGGTTGTTGTTCCCATTGCTTATATCTGATCACCAACCTGTCTGTGGAAA 674
Query 671 AGAAAAATTTGAAGAATCTCTTAAGAAGGTTGTTGAGATGGGTTTTGAACCGACAACCTC 730
|||||| ||||||||||| || ||||| |||||||||||||||||||| || || |||||
Sbjct 675 AGAAAATTTTGAAGAATCACTCAAGAAAGTTGTTGAGATGGGTTTTGATCCAACCACCTC 734
Query 731 AAAGTTTGTCAACGCTC-TACGTGTTGTTCAAAGAATCAGCGAGAAAGA-AATAGAAG-A 787
|||||||||||| |||| || | |||||| | ||| || |||| ||| | ||||||| |
Sbjct 735 AAAGTTTGTCAAAGCTCTTA-GGGTTGTTTACAGATTCCGCGACAAA-ACTATAGAAGCA 792
Query 788 AAAGGTCAGTTTCTATAAAAGGTTAGGCTTTGATGTGGGAGATGTATCTGAAATGTTCAA 847
||| || | | ||| |||||| ||||||||| ||| |||||||||| | |||||| ||
Sbjct 793 AAA-GTTAATGTCTGTAAAAGTTTAGGCTTTTCTGTTGGAGATGTATGGGCAATGTTTAA 851
Query 848 GAAGTATCCAGT-CTCTATGAGA-TTATCCGAAAAGAAGATAACTCAGAAGTT-TGAAAC 904
||||| ||| | || | ||| | || || || || |||||| ||| || || |||||
Sbjct 852 GAAGTGTCC-TTCCTTTCTGA-ATTTCTCTGAGAACAAGATAGTTCA-AACTTGGGAAAC 908
Query 905 CTTGAAGAAGTGTGGACTACTCGAAGACGA-GATCCTCTCAGTGTT-------T--CCGC 954
| |||||||||||||||||||||||||||| | ||||||||||||| | || |
Sbjct 909 CCTGAAGAAGTGTGGACTACTCGAAGACGATG-TCCTCTCAGTGTTGAAGAAGTTTCCAC 967
Query 955 AATGCATTGGTGCTTCGGAGCAGAAGATAGCAAAATCCATTGAAACATTTAAAGACCTCG 1014
|||||||| |||||| |||||||||||| || ||||||||||||||| || | | |
Sbjct 968 AATGCATTAATGCTTCAGAGCAGAAGATAATGAACTCCATTGAAACATTTCTAGGCTTAG 1027
Query 1015 GATTCAGCAAAAATGAGTTTGCGTTTATGGTCAAGCACTTTCCT-ATGTGTCTTAACATA 1073
|||| |||| | ||||| |||| | || | ||||| ||||||| | || |||| ||
Sbjct 1028 GATTTAGCAGAGATGAGGTTGCAATGATAGCCAAGCGCTTTCCTCAA-TGCCTTATTTTA 1086
Query 1074 TCCGCagagacggtgaagaagaagac-gaagtttctggtgaagaagaagaat 1124
|| |||||||| |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 1087 TCTGCAGAGACAGTGAAGAAAAAGACTGA-GTTTCTGGTGAAGAAGATGAAT 1137
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 743 bits (402), Expect = 0.0
Identities = 831/1029 (81%), Gaps = 66/1029 (6%)
Strand=Plus/Plus
Query 136 GAGCT-AA-AGATGGTCAAAAAGGT-CAG-ATTTTCACTATCTCTTACCTCATTGATTCA 191
||||| || |||||||| |||| || || | ||| ||| ||||||||||| ||||||||
Sbjct 355 GAGCTCAAGAGATGGTCGAAAA-GTGAAGAACTTT-ACTGTCTCTTACCTCGTTGATTCA 412
Query 192 TTGGGTTTAACCGCAAACCTCGCTGAATCGATCTC-AAGAAAAGTAAGCTTCGAGGA-GA 249
||||||||| | |||| ||||||||||| ||||| ||| ||||| || |||| | | |
Sbjct 413 TTGGGTTTAGCTACAAAACTCGCTGAATCAATCTCAAAG-AAAGTCAGTTTCGTGAACAA 471
Query 250 GGAGAAATCCTGACTCT-GTTCTGAATCTTTTTAGAAGTTACGGATTCACAGATTCTCAG 308
|| | |||||||| | | ||||||| ||||||||||||||| || |||||| ||||||||
Sbjct 472 GG-GCAATCCTGA-TTTAGTTCTGAGTCTTTTTAGAAGTTATGGGTTCACAAATTCTCAG 529
Query 309 ATCGCAAGCATCATTACTGATTATCC-ACGATTGCTTATAGTAGATGCTAAGAAATCTCT 367
||| | ||||||||||| |||||||| | |||||||| || |||||||| ||||||| ||
Sbjct 530 ATCTCCAGCATCATTACGGATTATCCTA-GATTGCTTCTAATAGATGCTGAGAAATCACT 588
Query 368 TGGTCA-CAAGCTTCAAG-TTTTGCAGTCTAGAGGAGTTTCAAGCTCTGAGCTCACTGAG 425
|| | | |||||||| || ||||| |||||||||||| ||||||| ||||||||||| ||
Sbjct 589 TGAT-ATCAAGCTTC-AGTTTTTGGAGTCTAGAGGAGCTTCAAGCCCTGAGCTCACTCAG 646
Query 426 ACTGTTTCTAAAGTTCCTAAAATCTTGGCAATGAAAG-GGGACAAAACTATAAGCAGATA 484
| |||||||| |||||||||||| |||| |||||||| |||| || || || |||||||
Sbjct 647 ATTGTTTCTACAGTTCCTAAAATATTGGGAATGAAAGAGGGA-AAGTCTCTAGGCAGATA 705
Query 485 CTATGATTTCGTCAGAGAGATTATCGAAGCGGGTAAGAGTTCTAAGTTCGAAAAGTTATG 544
|||||||||||||| ||||||||| ||||| | ||||||||| |||| ||||| || ||
Sbjct 706 CTATGATTTCGTCAAAGAGATTATAGAAGCAGATAAGAGTTCCAAGTACGAAACTTTGTG 765
Query 545 TCAATCTATGCCACAGGGT-AT--GCAAGAG-AATAAAATCCGAAAT-TTATCTGTT-TT 598
|||| || ||||| ||| | || || || | ||||||||| ||||| || || ||| ||
Sbjct 766 TCAACCTTTGCCAGAGGCTAATAGGC-AGGGTAATAAAATCAGAAATGTT-TCGGTTCTT 823
Query 599 GAGAGAACTT-GGCGTGCCTCAGAGGTTATTATTC-CCTTTGCTCGTCTCTGATCG-TAA 655
|||| |||| || |||||||||| ||| |||||| || |||||| |||||||| | |
Sbjct 824 -AGAG-ACTTGGGTGTGCCTCAGAAGTTGTTATTCTCC-TTGCTCATCTCTGAT-GCCCA 879
Query 656 ACTTGTATGTGGAAAAGAAAAATTTGAAGAATCTCTTAAGAAGGTTGTTGAGATGGGTTT 715
|| ||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 880 ACCTGTTTGTGGAAAAGAAAATTTTGAAGAATCACTCAAGAAGGTTGTTGAGATGGGTTT 939
Query 716 TGAACCGACAACCTCAAAGTTTGT-CAACGCTC-TACGTGTTGTTCAAAGAATCAGCGAG 773
||| || || |||||||||||||| ||| |||| || | | |||| | ||| ||| |||
Sbjct 940 TGATCCAACCACCTCAAAGTTTGTCCAA-GCTCTTA-GGGCTGTTTACAGATTCACCGAC 997
Query 774 AAAGA-AATAGAAGAAAAG-GTCAGTTTCTATAAAAGGTTAGGCTTTGATGTGGGAGATG 831
||| | |||||||| |||| || | | | |||||| |||| ||||||| ||||| |||||
Sbjct 998 AAA-ACAATAGAAG-AAAGAGTTAATGTGTATAAAGGGTTCGGCTTTGCTGTGGAAGATG 1055
Query 832 TATCTGAAATGTTCAAGAAGTATCCAGT-CTCTATG-AGATTATCCGAAAAGAAGATAAC 889
||| | |||||||||||| | ||| | || | || | | | || || ||||||||
Sbjct 1056 TATGGGCAATGTTCAAGAAATGTCC-TTACTTTTTGAATAGT-TCGGAGAAGAAGATTGG 1113
Query 890 TCAGA-AGTTTGAAACCTTGAAGAAGTGTGGACTACTCGAAGACGAGATCCTCTCAGTGT 948
||||| | |||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1114 TCAGACA-ATTGAAACCCTGAAGAAGTGTGGACTACTCGAAGACGAGGTCATCTCAGTGT 1172
Query 949 T-------T--CCGCAATGCATTGGTGCTTCGGAGCAGAAGATAGCAAAATCCATTGAAA 999
| | ||||| ||||||||| |||| |||||||||||| || ||||||||||
Sbjct 1173 TGAAAAAGTATCCGCAGTGCATTGGTACTTCAGAGCAGAAGATATTGAACTCCATTGAAA 1232
Query 1000 CATTTAAAGACCTCGGATTCAGCAAAAATGAGTTTGCGTTT-A-TGGTCAAGCACTTTCC 1057
|||| || ||| || ||||||| | ||||||| | | | |||| |||| ||||||
Sbjct 1233 TATTTCTAGGCCTAGGCTTCAGCAGAGATGAGTT--CATAACAATGGTTAAGCGCTTTCC 1290
Query 1058 T-ATGTGTCTTAACATATCCGCagagacggtgaagaagaagac-gaagtttctggtgaag 1115
| | |||||||| |||| |||||||||||||||||||||| || |||| ||||||||
Sbjct 1291 TCA-GTGTCTTATTTTATCTGCAGAGACGGTGAAGAAGAAGATTGA-GTTTGTGGTGAAG 1348
Query 1116 aagaagaat 1124
|||| ||||
Sbjct 1349 AAGATGAAT 1357
> AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902150-22903837 FORWARD
LENGTH=1688
Length=1688
Score = 704 bits (381), Expect = 0.0
Identities = 794/986 (81%), Gaps = 57/986 (6%)
Strand=Plus/Plus
Query 172 TCTCTTACCTCA-TTGATTCATTGGGTTTAACCGCAAACCTCGCTGAATCGATCT-CAAG 229
|||||||||| | |||||||||||||||||||| |||| ||||| |||||||||| ||||
Sbjct 253 TCTCTTACCT-AGTTGATTCATTGGGTTTAACCACAAAGCTCGCAGAATCGATCTCCAAG 311
Query 230 AAAAGTAAGCTTCGAGGAGAGGAGAAATCCTGACTCTGTTCTGAATCTTTTTAGAAGTTA 289
||||||||||||||||||||||||||||| || |||||||||| |||| ||| ||||||
Sbjct 312 -AAAGTAAGCTTCGAGGAGAGGAGAAATCCGGATTCTGTTCTGAGTCTTCTTACAAGTTA 370
Query 290 CGGATTCACAGATTCTCAGATCGCAAGCATCATTACTGAT-TATCCACGATTGCTTATAG 348
|| |||||| | |||||||| |||| ||||||||| || || |||||||||||| |
Sbjct 371 TGGGTTCACAAAGTCTCAGATTTCAAGTATCATTACT-ATCTACCCACGATTGCTTGCAT 429
Query 349 TAGATGCTAAGAAATCTC-TTGGTCACAAGCTTCAAGTTT-TGCAGTCTAGAGGAGTTTC 406
|||||||| ||||||| | ||| || ||||||||| || | ||||||| ||||||| |||
Sbjct 430 TAGATGCTGAGAAATC-CATTGCTCCCAAGCTTCA-GTCTCTGCAGTCCAGAGGAGCTTC 487
Query 407 AAGCTCTGAGCTCACTGAGACTGTTTCTAAAGTTCCTAAAATCTTGGC-AATGAAAGGGG 465
|||||||||||||||| ||| |||||||| |||||||||||||||| || || ||||
Sbjct 488 AAGCTCTGAGCTCACTCAGATTGTTTCTACTGTTCCTAAAATCTTGGGGAA-GAGAGGGC 546
Query 466 ACAAAACTATAAGCAG-ATACTATGATTTCGTCAGAGAGATTATCGAAGCGGGTAAGAGT 524
||||| |||||| | | ||||||||||||||||| ||| ||||| ||||| | |||||||
Sbjct 547 ACAAATCTATAA-CTGTATACTATGATTTCGTCAAAGACATTATAGAAGCTGATAAGAGT 605
Query 525 TCTAAGTT-CGAAAAGTTATGTCAATCTATGCCACAGGGTATGCAAGA-GAATAAAATCC 582
|||| ||| ||||||||||||||| ||| | |||||||||| ||||| |||||| |||
Sbjct 606 TCTA-GTTACGAAAAGTTATGTCATTCTTTTCCACAGGGTAA-CAAGAAGAATAAGATCA 663
Query 583 GAAATTTATCTGTTTTGAGAGAACTTGGC-GTGCCTCAGAGGTTATTATTCCCTTTGCTC 641
||||| | ||||||||||||||| |||| ||| ||||| | || |||||||||||||||
Sbjct 664 GAAATATCTCTGTTTTGAGAGAA-TTGGGTGTGGCTCAGCGTTTGTTATTCCCTTTGCTC 722
Query 642 GTCTCTGATCGTAAACTTGTATGTGGAAAAGAAAAATTTGAAGAATCTCTTAAGAAGGTT 701
|||| ||| | ||| ||| ||||| ||||||| ||||||||||||||| |||||||||
Sbjct 723 ATCTCAGATGGCCAACCTGTCTGTGGTAAAGAAAGATTTGAAGAATCTCTCAAGAAGGTT 782
Query 702 GTTGAGATGGGTTTTGAACCG-ACAACCT-CAAAGTTTGTC-AACGCTCTACGTGTTGTT 758
||||||||||||||||| ||| | | | | ||||||| || || ||||| || ||| ||
Sbjct 783 GTTGAGATGGGTTTTGATCCGGAGA-C-TACAAAGTTCGTTGAA-GCTCTGCGAGTTATT 839
Query 759 CAAAGAATCAGCGAGAAAGA-AATAGAAGAAAAGGTCAGTTTCTATAAAAGGTTAGGCTT 817
| | || || || ||| | |||||||||||| |||| | |||| ||||||||||||||
Sbjct 840 TACCGTATGAGTGACAAA-ACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTAGGCTT 898
Query 818 TGATGTGGGAGATGTATCTGAAATGTTCAAGAAGTATCCAGTCTCTAT-GAGATTA-TCC 875
|| ||||| ||||||| | ||| |||||||||| || ||| | | | || | ||
Sbjct 899 TGGTGTGGCTGATGTATGGGCAATCTTCAAGAAGTGGCCT-TCTTTTTTGTCAT-ACTCA 956
Query 876 GAAAAGAAGATAACTCAGAAGTTTGAAACC-TTGAAGAAGT-GTGGACTACTCGAAGACG 933
|| |||||||||||||| | ||||||||| || |||| || |||| || || || |||
Sbjct 957 GAGAAGAAGATAACTCATACTTTTGAAACCCTT-AAGA-GTTGTGGTCTGCTTAAACACG 1014
Query 934 AGATCCTCTCAGTGTT---------TCCGCAATGCATTGGTGCTTCGGAGCAGAAGATAG 984
|| |||| | | |||| ||| |||||||| || |||| ||||||||||| |
Sbjct 1015 AGGTCCTGTTATTGTTGAAGAAGCATCCAAAATGCATTTGTTCTTCAGAGCAGAAGATTG 1074
Query 985 CAAAATCCATTGAAACATT-TAAAGACCTCGGATTCAGCAAAAATGAGTTTGCGTTTATG 1043
|| ||||| |||||||| | | | ||| |||||||||| | ||||||||||| | |||
Sbjct 1075 TGAACTCCATAGAAACATTCTTAGG-CCTAGGATTCAGCAGAGATGAGTTTGCGATGATG 1133
Query 1044 GTCAAGC-ACTTTCCT-ATGTGTC-TTAACATATCC-GCagagacggtgaagaagaagac 1099
||||||| | | |||| | ||| | || || ||| | || ||||| ||||||||||| ||
Sbjct 1134 GTCAAGCGA-TATCCTCA-GTG-CATTGAC-TATACTGCTGAGACAGTGAAGAAGAAAAC 1189
Query 1100 -gaagtttctggtgaagaagaagaat 1124
|| |||| | |||||||| | ||||
Sbjct 1190 TGA-GTTTATTGTGAAGAATATGAAT 1214
> AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904486-22907630 FORWARD
LENGTH=2848
Length=2848
Score = 580 bits (314), Expect = 9e-165
Identities = 595/728 (82%), Gaps = 29/728 (4%)
Strand=Plus/Plus
Query 172 TCTCTTACCTCATTGATTCATTGGGTTTAACCGCAAACCTCGCTGAATCGATCTCAAGAA 231
|||||||||| ||||||||||||| |||||| |||| ||||||||||| || ||| | |
Sbjct 391 TCTCTTACCTTGTTGATTCATTGGGCTTAACCACAAAACTCGCTGAATCCATTTCACGGA 450
Query 232 AAGTAAGCTTCGAGGAGAGGAGA-AATCCTGACTCTGTTCTGAATCTTTTTAGAAGTTAC 290
| || ||||||||||| | || | |||||||| ||||||||||||||||| | |||| |
Sbjct 451 AGGTTAGCTTCGAGGACAAGA-ACAATCCTGATTCTGTTCTGAATCTTTTGACAAGTCAT 509
Query 291 GGATTCACAGATTCTCAGATCGCAAGCATCATTACTGATTATCCACGA-TTGCTTATAGT 349
|| ||||||| |||||||||| | | |||||||| ||||| |||| | ||||||||||
Sbjct 510 GGGTTCACAGGTTCTCAGATCTCCACCATCATTAGGGATTACCCAC-AGTTGCTTATAGC 568
Query 350 AGATGCTAAGAAATCTCTTGGTCACAAGCTTCAAG-TTTTGCAGTCTAGAGGAGTTTCAA 408
||||||| ||||||| ||||||| |||||||| || |||||||||||||||||| |||||
Sbjct 569 AGATGCTGAGAAATCACTTGGTCCCAAGCTTC-AGTTTTTGCAGTCTAGAGGAGCTTCAA 627
Query 409 GCTCTGAGCTCACTGAGACTGTTTCTAAAGTTCCTAAAATCTTGGCAATGAAAGGGGACA 468
||||||| ||||||||| ||||||| |||||| |||| |||| || ||||||| |||
Sbjct 628 GCTCTGAAATCACTGAGATTGTTTCTTCAGTTCCGGAAATATTGGGAAAGAAAGGGCACA 687
Query 469 AAACTATAAGCAG-ATACTATGATTTCGTCAGAGAGA-TTATCGAAGCGGGTAAGAGTTC 526
||||||| ||| | ||||||||||||| ||| ||| | || | | | | ||||||||
Sbjct 688 AAACTATCAGC-GTATACTATGATTTCATCAAAGACACTT-T-G-CTTGAG-AAGAGTTC 742
Query 527 TAAGTTCGAAAAGTTATGTCAATCTATGCCACAGGGT-ATGCAAGAGAATAAAATCCGAA 585
||| ||||||||||||||| ||| ||||||||||| || | ||||| || ||| |||
Sbjct 743 CAAGAACGAAAAGTTATGTCATTCTTTGCCACAGGGTAAT-CTGGAGAACAAGATCAGAA 801
Query 586 ATTTATCTGTTTTGAGAGAACTT-GGCGTGCCTCAGAGGTTATTATTC-CCTTTGCTCGT 643
|| |||| ||||| |||||| || || ||||||| | ||| |||||| || |||||| |
Sbjct 802 ATGTATCGGTTTTAAGAGAA-TTGGGAATGCCTCACAAGTTGTTATTCTCC-TTGCTCAT 859
Query 644 CTCTGATCGTAAACTTGTATGTGGAAAAGAAAAATTTGAAGAATCTCTTAAGAAGGTTGT 703
||| ||| | ||| |||||||||||||||||||||||||||| | || ||||| |||||
Sbjct 860 CTCCGATAGCCAACCTGTATGTGGAAAAGAAAAATTTGAAGAAACCCTCAAGAAAGTTGT 919
Query 704 TGAGATGGGTTTTGAACCGACAACCTCAAAGTTTGTC-AACGCTCTACGTGTTGTTCA-A 761
||||||||||||||| || || ||||||||||||||| || ||||||| ||| || | |
Sbjct 920 TGAGATGGGTTTTGATCCTACCACCTCAAAGTTTGTCGAA-GCTCTACAAGTTATTTACA 978
Query 762 AGAATCAGCGAGAAAGA-AATAGAAGAAAAGGTC-AGTTTCTATAAAAGGTTAGGCTTTG 819
| ||| | ||||||| | ||| |||||||| ||| | | |||||||||| ||||||||||
Sbjct 979 A-AATGAACGAGAAA-ACAATCGAAGAAAAAGTCCA-TCTCTATAAAAGCTTAGGCTTTG 1035
Query 820 ATGTGGGAGATGTATC-TGAAATGTTCAAGAAGTATCCAGTCTCTATGAGATTATCCGAA 878
||||||||||||||| | || | || || |||| ||| |||| ||||| |||| ||
Sbjct 1036 ATGTGGGAGATGTATGGTCAAGTTTTAAA-AAGTGGCCAATCTCGCTGAGAGTATCGGAG 1094
Query 879 AAGAAGAT 886
||||||||
Sbjct 1095 AAGAAGAT 1102
> AT1G62055.1 | Symbols: | pseudogene, hypothetical protein |
chr1:22940331-22940864 REVERSE LENGTH=534
Length=534
Score = 505 bits (273), Expect = 6e-142
Identities = 337/369 (91%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 87 GTCTCACCGCAAAACCCATTTTCTTTTTCCAGTTCCTTCTCTTCTACTAGAGCTAAAGAT 146
|||||| |||||| |||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 127 GTCTCAGTGCAAAATCCATTTGCTTTTTCCAATTCCTTCTCTTCTACTAGTGCTAAAGAT 186
Query 147 GGTCAAAAAGGTCAGATTTTCACTATCTCTTACCTCATTGATTCATTGGGTTTAACCGCA 206
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 187 GGTCGAAAAGGTCAGATTTTCACTATCTCTTACCTCATTGATTCATTGGGATTAACCGAA 246
Query 207 AACCTCGCTGAATCGATCTCAAGAAAAGTAAGCTTCGAGGAGAGGAGAAATCCTGACTCT 266
|| ||||||||||| ||||| || ||||||||| |||| ||||||||||||||||| |||
Sbjct 247 AAACTCGCTGAATCCATCTCGAGGAAAGTAAGCGTCGATGAGAGGAGAAATCCTGATTCT 306
Query 267 GTTCTGAATCTTTTTAGAAGTTACGGATTCACAGATTCTCAGATCGCAAGCATCATTACT 326
|||||||||||| |||||||||| || |||||||||||||||||| |||| ||||||||
Sbjct 307 GTTCTGAATCTTCTTAGAAGTTATGGTTTCACAGATTCTCAGATCTCAAGTATCATTACA 366
Query 327 GATTATCCACGATTGCTTATAGTAGATGCTAAGAAATCTCTTGGTCACAAGCTTCAAGTT 386
||||||| || |||||||||||||||||||||||||| |||| || ||||||||| |||
Sbjct 367 AATTATCCTCGGTTGCTTATAGTAGATGCTAAGAAATCACTTGCTCCCAAGCTTCAGGTT 426
Query 387 TTGCAGTCTAGAGGAGTTTCAAGCTCTGAGCTCACTGAGACTGTTTCTAAAGTTCCTAAA 446
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 427 TTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGACTGTTTCTACCGTTCCTAAA 486
Query 447 ATCTTGGCA 455
|||||||||
Sbjct 487 ATCTTGGCA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5