BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924790

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62045.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   335    1e-91


> AT1G62045.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 
26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22934688-22935343 
REVERSE LENGTH=495
Length=495

 Score =  335 bits (181),  Expect = 1e-91
 Identities = 219/237 (92%), Gaps = 4/237 (2%)
 Strand=Plus/Plus

Query  1    GTTTGCGAAAAGATATCGCGAA-ATGGCAAGTGAAGCACCGAGTTGGGCAGATCAATGGG  59
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  53   GTTTGCGAAAAGATATCGC-AATATGGCAAGTGAAGCACCGAGTTGGGCAGATCAATGGG  111

Query  60   GAACCGGAGGGATCGGCGAGATGCCGGAGGAAGAGAACACCAAAACCAAGAAAGATGCCA  119
            |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| 
Sbjct  112  GAACCGGAGGGATCGGGGAGATGCCGGAGGAAGACAACACCAAAAGCAAGAAAGATGCCG  171

Query  120  GCGGTAAGAATTCTGGCCAGAAC-AAATCGGCCAAGATTGTTGATTTCATAAGTCTCAAG  178
            |||||||||| |||||||| ||| ||||| |||||||||||||||||| ||||| | |||
Sbjct  172  GCGGTAAGAACTCTGGCCA-AACCAAATCAGCCAAGATTGTTGATTTCGTAAGTTTTAAG  230

Query  179  TGGATGAAGAATCTTGTGCagaagaagaaaaaagactctgattcttgaaaaagaaga  235
            ||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||
Sbjct  231  TGGATGAAGAATCTTGTCCATAAGAAGAAGAAAGACTCTGATTCTTGAAAGATAAGA  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5