BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924793
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62120.1 | Symbols: | Mitochondrial transcription terminati... 1123 0.0
AT1G61980.1 | Symbols: | Mitochondrial transcription terminati... 891 0.0
AT1G61970.1 | Symbols: | Mitochondrial transcription terminati... 880 0.0
AT1G62010.1 | Symbols: | Mitochondrial transcription terminati... 758 0.0
AT1G62085.1 | Symbols: | Mitochondrial transcription terminati... 749 0.0
AT1G62150.1 | Symbols: | Mitochondrial transcription terminati... 719 0.0
AT1G62110.1 | Symbols: | Mitochondrial transcription terminati... 627 1e-178
AT1G61990.1 | Symbols: | Mitochondrial transcription terminati... 512 3e-144
AT1G62490.1 | Symbols: | Mitochondrial transcription terminati... 228 1e-58
AT1G62055.1 | Symbols: | pseudogene, hypothetical protein | ch... 215 9e-55
> AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960191-22961779 REVERSE
LENGTH=1589
Length=1589
Score = 1123 bits (608), Expect = 0.0
Identities = 1005/1191 (84%), Gaps = 50/1191 (4%)
Strand=Plus/Plus
Query 2 TGCTGATGTGAGTCT-TAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTC 60
|||||||||||| || |||||||||| ||||||| | ||| ||||| || |||||||||
Sbjct 269 TGCTGATGTGAG-CTCAAGAGATGGTCGAAAAGGTCACAAC-TTTACAGTTTCTTACCTC 326
Query 61 GTTGATTCACTT-GGTTTAGCTA-AAAAGGTAGCAGAATCGAT-TATAAGAAAAGTCAGT 117
||||||||| || |||||||||| |||| || || |||||||| | | | |||||||||
Sbjct 327 GTTGATTCA-TTAGGTTTAGCTACAAAA-GTCGCTGAATCGATCTCCATG-AAAGTCAGT 383
Query 118 TTCGAGAACAAGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACA 177
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTCGATAACAAGGGCAACCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACT 443
Query 178 GATACTCAGATCTCCAGCATCATTACGGACTATCC-ACTATTGCTCATAGC-AGATGGTG 235
||| |||||||||||| |||||||| ||||| ||| | |||||| || | ||||| ||
Sbjct 444 GATTCTCAGATCTCCAACATCATTA-GGACTTTCCCAAGATTGCTTATC-CTAGATGCTG 501
Query 236 A-AAATTCCATTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAG 294
| |||| || ||| |||||| ||| ||||| ||||||| | ||| |||||||||||||||
Sbjct 502 AGAAATCCC-TTGCTCCCAAGCTTCAGTTTCTGCAGTCCATAGGTGCTTCAAGCTCTGAG 560
Query 295 CTCACAGAGATTGTTTCTGAAGTTCCGAGAATCTTGGGAAAGAGA--GGGCACAAAACTA 352
||||| |||| |||||||| |||||||| ||| ||||| |||||| ||||| || ||
Sbjct 561 CTCACCGAGACTGTTTCTGCAGTTCCGAAAATATTGGGGAAGAGAAAGGGCA-AAT-CTC 618
Query 353 TCAGCAGATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAGTTCG 412
||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
Sbjct 619 TCAGCAGATACTATGATTTCGTCAAAGTCATTATAGAAGCGGATAAGAGTTCCAAGTTAG 678
Query 413 AAAAGTTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATG 472
||||||||||||||||||||||| |||||||||||||||||||||| || |||| | |
Sbjct 679 AAAAGTTATGTCATTCTTTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAA-A--T- 734
Query 473 TT-TTGGTTTTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTATTCTCCTTGCTCATCTCT 531
|| ||||| ||||||||| |||| ||||||||||||||| ||||||| ||||| || ||
Sbjct 735 TTATTGGTGTTGAGAGAAATGGGTGTGCCTCAGAGGTTGTTATTCTCATTGCTTATATCC 794
Query 532 GATAACGGACATGTATGTGGaaaa-aaaaGATTTGAAGAATCACTCAACAAGGTTGTTGA 590
||| |||| |||| ||||| ||| |||| |||| ||||||||||||| |||| ||||||
Sbjct 795 GATGCCGGAGATGTTTGTGGTAAAGAAAA-ATTTAAAGAATCACTCAAGAAGGCTGTTGA 853
Query 591 GATGGGTTTTGATCCAACCACTGCAAGTTTTGTCCGTGCTCTGCACGTTATTCAAGGATT 650
||| ||||||||||||||||| |||| ||||||| ||||| ||||| || | |||||
Sbjct 854 GATTGGTTTTGATCCAACCACCGCAACTTTTGTCAAAGCTCTTAACGTTCTTTACGGATT 913
Query 651 TAGCGACAAAACAATAGAAGA-AAAGGTCAAT-CTCTATAAAAGGTTAGGCTTTGATGTG 708
||||||||| ||| ||| | ||| ||||| | || ||||||||||||||| | ||||
Sbjct 914 AAGCGACAAAGGAATTGAAAATAAAT-TCAATGC-CTGTAAAAGGTTAGGCTTGGCTGTG 971
Query 709 GGA-GATGTATGGGAAATGTTCAAGAAGTTTCCAA-CATTTCT-AGGAC-TCTCGGAGAA 764
| | |||||||||| |||||||||||||| |||| |||| || | | ||| | ||||
Sbjct 972 G-ACGATGTATGGGCAATGTTCAAGAAGTGGCCAAACATT-CTGACAAAGTCT-G-AGAA 1027
Query 765 GAAAATAGCCAACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTGT 824
||| |||| |||||| ||||||||||| || |||||||||||| |||||||||| || |
Sbjct 1028 GAAGATAGAGAACTCCGTTGAAACATTTCTAGGCCTAGGATTCAGCAGAGATGAGTTTTT 1087
Query 825 GGTCATGGTCAAGCGCTTTCCTCCGTGCATTGGATGTTCTGCAGAGTCGGTGAAGAAGAA 884
| | ||||||||||| || |||| ||||||||||| |||| |||||| | |||||| |||
Sbjct 1088 GATGATGGTCAAGCGATTCCCTCAGTGCATTGGATATTCTACAGAGTTGATGAAGACGAA 1147
Query 885 GACTGAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGCTGTGGCTTCATTCCCTCA 944
|||||| |||||||| | | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1148 GACTGAGTTTCTGGTGACGGAGATGAATTGGCCACTAAAGGCTGTGGCTTCAATCCCTCA 1207
Query 945 GGTAATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCT 1004
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1208 GGTACTCGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTTATCAAAGTTCT 1267
Query 1005 CATCTCAAAAGGATTGCTCGGAAGTGAACTCCCTCCA-T-TGCCGTGTGTGTTGTCAATT 1062
|||||||||||||||||||| |||||||||||||||| | | || | ||| ||| ||| |
Sbjct 1268 CATCTCAAAAGGATTGCTCGAAAGTGAACTCCCTCCAATAT-CC-TCTGTTTTGACAAGT 1325
Query 1063 ACC-GATCCAGCT-TTCTTAAACAAGTATGTG-GTGAAACATGATGACACGCAGCTCGTG 1119
||| | | || | || ||| | | |||||| | |||||||||||||| |||||| |||
Sbjct 1326 ACCAG-TG-AGGTGTTTTTATATATGTATGTTAG-GAAACATGATGACAAGCAGCTTGTG 1382
Query 1120 -CGTGAGTTAATCGCTATCTTCACCAAAAATCGTGTTTCACTCACTGATCA 1169
| |||||| || |||||||||||| | |||||||||||||||| |||||
Sbjct 1383 GC-TGAGTTGATGGCTATCTTCACCGGAGATCGTGTTTCACTCACCGATCA 1432
> AT1G61980.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22908045-22909588 FORWARD
LENGTH=1544
Length=1544
Score = 891 bits (482), Expect = 0.0
Identities = 950/1164 (82%), Gaps = 80/1164 (7%)
Strand=Plus/Plus
Query 10 TGAGTCTTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTCGTTGATTCA 69
|||||| ||||| ||||| ||||||||||| | ||||| |||||||||||||||||||||
Sbjct 242 TGAGTCCTAGAGTTGGTCGAAAAGGTAAGAGC-TTTACAGTCTCTTACCTCGTTGATTCA 300
Query 70 CTT-GGTTTAGCTAAAAAGGTAGCAGAATCGATTAT-AAGAAAAGTCAGTTTCGAGAACA 127
|| |||||| | |||||| | || |||||| | | ||| || || || |||||| |||
Sbjct 301 -TTGGGTTTACCCAAAAAGCTCGCTGAATCG-GTCTCAAGGAAGGTTAGCTTCGAGGACA 358
Query 128 AGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGATACTCAGA 187
||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 359 AGGACAACCCTGACTCTGTTCTGAATCTTTTGAGAAGTCATGGGTTCACTGATTCTCAGA 418
Query 188 TCTCCAGCATCATTACGGACTATCCACTATTGCTCATAGCAGATGGTGA-AAATTCCA-T 245
|||||| |||| ||||||| ||||||| |||||| |||| |||| ||| ||| | || |
Sbjct 419 TCTCCACCATCGTTACGGATTATCCACAATTGCTTGTAGCTGATGCTGAGAAA-T-CACT 476
Query 246 TGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACAGAGAT 305
|| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 TGCTCCCAAGCTTCAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGAT 536
Query 306 TGTTTCTGA-AGTTCCGAGAATCTTGGGAAAGAGAGGGCACAAAACTATCAGCAG-ATAC 363
||||||| | |||||| | |||||||||||||||||| ||||||||||||||| | || |
Sbjct 537 TGTTTCT-ACAGTTCCTAAAATCTTGGGAAAGAGAGGCCACAAAACTATCAGC-GTATTC 594
Query 364 TATGATACCGTCAAAGAGA-TTGTAGAAGC-GGATAAGAGTTCCAAGTTCGAAAAGTTAT 421
|||||| | ||||||| | || | | | |||||||||||||||| |||||||| ||
Sbjct 595 TATGATTTCATCAAAGAAACTT-T---A-CTTGATAAGAGTTCCAAGTCCGAAAAGTCAT 649
Query 422 GTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATGTT-T-TGGT 479
|||| |||| ||||| || |||| | ||||||||| | | |||||| || | | ||
Sbjct 650 GTCAACCTTTTCCACA-GG--GTAATCTGGAGAACAAGA-T--CAGAAAT-TTATCT-GT 701
Query 480 TTTGAGAGAATTGGGCG-TGCCTCAGAGGTTGCTATTCTCCTTGCTCATCTC-TGATAAC 537
||||||||||||||| | ||||||| | |||| ||||| ||||||||||||| || | ||
Sbjct 702 TTTGAGAGAATTGGG-GATGCCTCACAAGTTGTTATTCCCCTTGCTCATCTCTTG-TGAC 759
Query 538 GGACATGTATGT-GG-aaaaaaaaGATTTGAAGAATCACTCAACAAGGTTGTTGAGATGG 595
| || ||| | | || ||| |||| |||||||||||| ||||| || |||||||||||||
Sbjct 760 GTACCTGTCT-TCGGTAAAGAAAA-ATTTGAAGAATCCCTCAAGAAAGTTGTTGAGATGG 817
Query 596 GTTTTGATCCAACCA-CTGC-AAGTTTTGTCCG-TGCTCTGCACGTTATTCAAGGATTTA 652
||||||||||| ||| || | ||| ||||| | ||| || |||| ||||| |||| |
Sbjct 818 GTTTTGATCCATCCACCT-CAAAG-TTTGT-GGAAGCTTTGTGCGTTGTTCAAAGATTGA 874
Query 653 GCGAC-AAAACAATAGAAGA-AAAGGTCAATCTC-TATAAAAGGTTAGGCTTTGATGTGG 709
||||| ||||| |||||||| ||| |||||| | |||||||||||||||||||||||||
Sbjct 875 GCGACAAAAAC-ATAGAAGATAAA-GTCAAT-GCGTATAAAAGGTTAGGCTTTGATGTGG 931
Query 710 GAGATGTATGGGA-AATGTTCAAGAAGTTTCC-AACATTTCTAG-GACTCTCGGAGAAGA 766
| |||||| ||| | ||||||||| || || ||| ||||| | || |||||||||||
Sbjct 932 AATATGTAT-GGACAGTGTTCAAGAGGTGGCCAAAC-TTTCT-GACACACTCGGAGAAGA 988
Query 767 AAATAGCCAACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTGT-G 825
| ||| ||| |||||||||||||| || ||||||| |||| |||||||||| || | |
Sbjct 989 AGATATTGAACACCATTGAAACATTTCTAGGCCTAGGGTTCAGCAGAGATGAG-TT-TAG 1046
Query 826 -GTCATGGTCAAGCGCTTTCCTCCGTGCATTGGATGT-TCTGCAGAG-TCGGTGAAGAAG 882
|| | | ||||||||||||| | ||||||||| | || || ||| | ||| || |||
Sbjct 1047 CGTGTTAATTAAGCGCTTTCCTCAGGGCATTGGAT-TATCCGCGGAGAT-GGTTAAAAAG 1104
Query 883 AAGACTGAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGCTGTGGCTTCATTCCCT 942
|||||||| ||| |||||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 1105 AAGACTGAGTTTTTGGTAAAGAAGATGAATTGGCCACTAAAGGCTCTTGTTTCAAACCCT 1164
Query 943 -CAGGTAATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAAT-CAAAG 1000
| ||| ||||||||||||||||||||||||||||||||||| |||| ||| | ||| |
Sbjct 1165 GC-GGTGCTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGGGTAACGTAGTTCAA-G 1222
Query 1001 TTCTCATCTCAAAAGGATTGCTCGGAAGTGAACTCCCTCC-AT-TGCCGTGTGTGTT-GT 1057
||||||||| || |||||| ||||||||||||||||| | || | | | |||| || ||
Sbjct 1223 CTCTCATCTCCAAGGGATTGATCGGAAGTGAACTCCCTTCGATAT-C-GCGTGTCTTCGT 1280
Query 1058 CAAT-TACCGATCCAGCT-TTCTTAAACAAGTATGTGGTGAAACATGATGACACGCAGCT 1115
| | |||||||| || | |||||||||| ||||||| || ||||| |||| ||||||
Sbjct 1281 -A-TGTACCGATC-AGGTGTTCTTAAACAGGTATGTGAAGAGGCATGAGGACAAGCAGCT 1337
Query 1116 CGTG-CGTGAGTTAATCGCTATCT 1138
| | | |||||| || |||||||
Sbjct 1338 GGAGAC-TGAGTTGATGGCTATCT 1360
> AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904486-22907630 FORWARD
LENGTH=2848
Length=2848
Score = 880 bits (476), Expect = 0.0
Identities = 943/1159 (81%), Gaps = 70/1159 (6%)
Strand=Plus/Plus
Query 10 TGAGTCTTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTCGTTGATTCA 69
|||||| ||||| ||||| |||||| || ||| ||||| ||||||||||| |||||||||
Sbjct 352 TGAGTCCTAGAGTTGGTCGAAAAGGAAACAAC-TTTACAGTCTCTTACCTTGTTGATTCA 410
Query 70 CTT-GGTTTAGCTA-AAAAGGTAGCAGAATCGATTAT-AAGAAAAGTCAGTTTCGAGAAC 126
|| || ||| | | |||| | || ||||| ||| | | | || || || |||||| ||
Sbjct 411 -TTGGGCTTAACCACAAAA-CTCGCTGAATCCATT-TCACGGAAGGTTAGCTTCGAGGAC 467
Query 127 AAGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGATACTCAG 186
||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||
Sbjct 468 AAGAACAATCCTGATTCTGTTCTGAATCTTTTGACAAGTCATGGGTTCACAGGTTCTCAG 527
Query 187 ATCTCCAGCATCATTACGGACTATCCACTA-TTGCTCATAGCAGATGGTGA-AAATTCCA 244
||||||| |||||||| ||| || |||| | ||||| |||||||||| ||| ||| | ||
Sbjct 528 ATCTCCACCATCATTAGGGATTACCCAC-AGTTGCTTATAGCAGATGCTGAGAAA-T-CA 584
Query 245 -TTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACAGAG 303
|||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 585 CTTGGTCCCAAGCTTCAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAAATCACTGAG 644
Query 304 ATTGTTTCTGAAGTTCC-GAGAATCTTGGGAAAGAGAGGGCACAAAACTATCAGCAG-AT 361
||||||||| |||||| || ||| |||||||||| ||||||||||||||||||| | ||
Sbjct 645 ATTGTTTCTTCAGTTCCGGA-AATATTGGGAAAGAAAGGGCACAAAACTATCAGC-GTAT 702
Query 362 ACTATGATACCGTCAAAGAGA-TTGTAGAAGC-GGATAAGAGTTCCAAGTTCGAAAAGTT 419
|||||||| | ||||||| | || | || || |||||||||||| |||||||||
Sbjct 703 ACTATGATTTCATCAAAGACACTT-T----GCTTGAGAAGAGTTCCAAGAACGAAAAGTT 757
Query 420 ATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATGTTTTGGT 479
|||||||||||||||||| || |||| | ||||||||| | | |||||||| | |||
Sbjct 758 ATGTCATTCTTTGCCACA-GG--GTAATCTGGAGAACAAGA-T--CAGAAATGTATCGGT 811
Query 480 TTTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTATTCTCCTTGCTCATCTCTGATAACGG 539
||| ||||||||||| ||||||| | |||| ||||||||||||||||||| |||| |
Sbjct 812 TTTAAGAGAATTGGGAATGCCTCACAAGTTGTTATTCTCCTTGCTCATCTCCGATAGCCA 871
Query 540 ACATGTATGTGGaaaa-aaaaGATTTGAAGAATCACTCAACAAGGTTGTTGAGATGGGTT 598
|| ||||||||||||| |||| |||||||||| | ||||| || ||||||||||||||||
Sbjct 872 ACCTGTATGTGGAAAAGAAAA-ATTTGAAGAAACCCTCAAGAAAGTTGTTGAGATGGGTT 930
Query 599 TTGATCCAACCA-CTGC-AAGTTTTGTCCG-TGCTCTGCACGTTA-TT-CAAGGATTTAG 653
||||||| |||| || | ||| ||||| || ||||| || |||| || ||| | | |
Sbjct 931 TTGATCCTACCACCT-CAAAG-TTTGT-CGAAGCTCTACAAGTTATTTACAA--AATGAA 985
Query 654 CGACAAAACAATAGAAGAAAAGGTCAATCTCTATAAAAGGTTAGGCTTTGATGTGGGAGA 713
||| |||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 986 CGAGAAAACAATCGAAGAAAAAGTCCATCTCTATAAAAGCTTAGGCTTTGATGTGGGAGA 1045
Query 714 TGTATGG-GAAATGTTCAAGAAGTTTCCAA-CATTTCTAG-GACTCTCGGAGAAGAAAAT 770
||||||| || | || || |||| |||| | | || | || | ||||||||||| ||
Sbjct 1046 TGTATGGTCAAGT-TTTAAAAAGTGGCCAATC-TCGCT-GAGAGTATCGGAGAAGAAGAT 1102
Query 771 AG-CCAACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTGTGGTCA 829
| ||||||||||||||||| | |||||||||||| |||||||||| ||| |
Sbjct 1103 -GTTGGACTCCATTGAAACATTTCTTGGCCTAGGATTCAGCAGAGATGAGTTTGCCAAGA 1161
Query 830 TGGTCAAGCGCTTTCCTCCGTGCATTGGATGT-TCTGCAGAGTCGGTGAAGAAGAAGACT 888
||||||||| |||||||||||||||||||| | ||| ||||| |||| || ||||| |||
Sbjct 1162 TGGTCAAGCACTTTCCTCCGTGCATTGGAT-TATCTACAGAGACGGTCAAAAAGAAAACT 1220
Query 889 GAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGCTGTGGCTTCATTCCCT-CAGGT 947
|| |||||||| ||||||||||||||||||||||||||||| | |||| |||| | |||
Sbjct 1221 GAGTTTCTGGTGAAGAAGATGAATTGGCCACTAAAGGCTGTTGTTTCAAACCCTGC-GGT 1279
Query 948 AATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCTCAT 1007
| ||||||| ||||| |||||||||| ||| |||||| |||| |||||||||| ||||||
Sbjct 1280 ATTTGGATATAGCCTGGAGAAGAGGATTGTTCCAAGGGGTAACGTAATCAAAGCTCTCAT 1339
Query 1008 CTCAAAAGGATTGCTCG-GAAGTGAACTCCCTCC-AT-TGCCGTGTGTGTTGTCAA-T-T 1062
|| ||||||||| | | ||| |||||||||| | || | | |||||| | || | |
Sbjct 1340 GTCCAAAGGATTGAT-GAGAAATGAACTCCCTTCGATAT-C-GTGTGTCCT--CATGTGT 1394
Query 1063 ACCGATCCAGCT-TTCTTAAACAAGTATGTGGTGAAACATGATG-ACACGCAGCTCGTG- 1119
||| | | || | || ||||||| |||||||| ||| || | || ||| |||||| |||
Sbjct 1395 ACCAAGC-AGGTGTTTTTAAACAGGTATGTGGCGAATCACG-TGGACAAGCAGCTGGTGA 1452
Query 1120 CGTGAGTTAATCGCTATCT 1138
|| ||||| || |||||||
Sbjct 1453 CG-GAGTTGATGGCTATCT 1470
> AT1G62010.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22915745-22917330 FORWARD
LENGTH=1586
Length=1586
Score = 758 bits (410), Expect = 0.0
Identities = 892/1114 (80%), Gaps = 76/1114 (7%)
Strand=Plus/Plus
Query 125 ACAAGGGCAATCCTGATTCTGTTCT-GAGTCTTTTGAGAAGTCATGGGTTCACAGATACT 183
||||||| ||| ||||||| ||||| || |||| | |||||| |||||||||| ||| ||
Sbjct 338 ACAAGGGAAATTCTGATTCCGTTCTGGA-TCTTCTCAGAAGTTATGGGTTCACTGATTCT 396
Query 184 CAGATCTCCAGCATCATTACGGACT-ATCCACTATTGCTCATAG-CAGATGGTG-AAAAT 240
||||||||||||||||| | ||| | || || | |||| |||| || ||| || | |
Sbjct 397 CAGATCTCCAGCATCATCA-GGAGTGATTCAAGAGTGCTTATAGACA-ATGATGCGACA- 453
Query 241 TCCATTGGTCCCAAA-CTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCAC 299
||| ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 454 TCCCTTGGT-TCAAAGCTTCAGTTTTTGCAGTCCAGAGGAGCTTCAAGCTCTGAGCTCAC 512
Query 300 AGAGATTGTTTCTGA-AGTTCCGAGAATCTT-GGGAA-AGAGAGGGCACAAAACTATCAG 356
||| ||||||| | |||||| | |||||| ||||| |||||||| |||| || ||||
Sbjct 513 TGAGGTTGTTTC-CACAGTTCCTAAAATCTTGGGGAAGAGAGAGGG--CAAATCTCTCAG 569
Query 357 CAGATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAGT-TCGAAA 415
|||||| |||||| | |||||| ||| ||||||| |||||||||||||||| | ||||
Sbjct 570 CAGATATTATGATTTCATCAAAGTCATTATAGAAGCTGATAAGAGTTCCAAGTAT-GAAA 628
Query 416 AGTTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATGTTT 475
|| ||| |||||||||| |||| || |||| || || | | |||||| | |
Sbjct 629 AGATATCTCATTCTTTGGCACA-GG--GTAA-CA--AG------A-T--CAGAAATATCT 673
Query 476 TGGTTTTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTA-TTCTCCTTGCTCATCTCTGAT 534
|||||||||||||| | ||||||||||| | | | || | || ||||||||||| |
Sbjct 674 TGGTTTTGAGAGAACTAGGCGTGCCTCAAAAGCGGTTACTGCT-TTTGCTCATCTC-CA- 730
Query 535 AA-CGGA-CATGTATGTGGaaaa-aaaaGATTTGAAGAATCACTCAACAAGGTTGTTGAG 591
|| || | | ||| ||||||||| ||||| ||||| | ||||||||| ||||| ||||||
Sbjct 731 AATCGCAGCCTGTTTGTGGAAAAGAAAAG-TTTGATGCATCACTCAAGAAGGTAGTTGAG 789
Query 592 ATGGGTTTTGATCCAACCA-CTGCAA-GTTTTGTCCGTGCTCTGCACGTTATTCAAGGAT 649
||||||||||||||||||| || ||| | ||||| | ||| |||| | || | |
Sbjct 790 ATGGGTTTTGATCCAACCACCT-CAACG-TTTGTGCACGCTTTGCATATGCTTTACCAAA 847
Query 650 TTAGCGACAAAACAATAGAAGAAAAGGT-CAATCTCTATAAAAGGT-TAGGCTTTGATGT 707
| ||||||||||| || |||||||| | | | |||||| || || |||| ||| | |
Sbjct 848 TGAGCGACAAAACGATTGAAGAAAAAATCCGA-GTCTATAGAA-GTGTAGG-TTT-CTCT 903
Query 708 G-GGA-GATGTATGGGAAATGTTCAAGAAGTTTCCAACATTTCTAGGACTC--TCGGAGA 763
| || |||||||||| |||||||||||||| || || ||| ||| | |||||||
Sbjct 904 GTTGATGATGTATGGGCAATGTTCAAGAAGTGGCC-AC-GCTCTTTGACACATTCGGAGA 961
Query 764 AGAAAATAGCCAACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTG 823
|||| |||||||||| || ||||||||| || | |||||||||| |||||||| | ||
Sbjct 962 AGAAGGTAGCCAACTCTATAGAAACATTTCTAGGTCTAGGATTCAGCAGAGATGTGTTTA 1021
Query 824 TGGTCATGGTCAAGCGCTTTCCTCCGTGCATTGGATGTTCTGCAGAGTCGGTGAAGAAGA 883
|| | ||| ||||||| ||||||||||| ||||||| |||| ||||| ||||||||||||
Sbjct 1022 TGATGATGTTCAAGCGGTTTCCTCCGTGTATTGGATATTCTACAGAGGCGGTGAAGAAGA 1081
Query 884 AGACTGAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGCTGTGGCTTCATTCCCTC 943
||||||| ||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1082 AGACTGAGTTTTTGGTCAAGGAGATGAATTGGCCAGTAAAGGCTGTGGCTTCAATCCCTC 1141
Query 944 AGGTAATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTC 1003
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1142 AGGTACTTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTTATCAAAGTTC 1201
Query 1004 TCATCTCAAAAGGATTGCTCGGAAGTGAACTCCCTCCATTGCCGTGTGTGTTGTCAATTA 1063
|||| |||||||||||||| | |||||||||||||||| || | | ||| ||| ||| ||
Sbjct 1202 TCATGTCAAAAGGATTGCTTGAAAGTGAACTCCCTCCAATGTCTTCTGTTTTGACAAGTA 1261
Query 1064 CC-GATCCAG-C-TTTCTTAAACAAGTATGTG-GTGAAACATGATGACACGCAGCTCGTG 1119
| | | || | ||| ||||| |||||| | ||||||||||||| |||||| |||
Sbjct 1262 CTAG-TG-AGTCGTTT-TTAAATTTGTATGTTAGC-AAACATGATGACAAGCAGCTTGTG 1317
Query 1120 -CGTGAGTTAATCGCTATCTTCACCAAAAATCGTGTTTCACTCACTGATCA-----C-C- 1171
| |||| | || || ||||||||| |||||||||||||||||| ||||| | |
Sbjct 1318 GC-TGAGCTGATGGCAATCTTCACCGGAAATCGTGTTTCACTCACCGATCAGAAGGCACG 1376
Query 1172 --TAGAACAATGAGCAACGTTAGGGATTGTTTTT 1203
|||||||||||||||||||| |||||||||||
Sbjct 1377 CCTAGAACAATGAGCAACGTTAAGGATTGTTTTT 1410
> AT1G62085.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22948757-22950142 REVERSE
LENGTH=1386
Length=1386
Score = 749 bits (405), Expect = 0.0
Identities = 663/783 (85%), Gaps = 36/783 (5%)
Strand=Plus/Plus
Query 6 GATGTGAGTCTTAGAGATGGTC-AAAAAGGTAAGAACTTTTACTGTCTCTTACCTCGTTG 64
|||| ||| ||||||| ||||| |||| ||| | | |||| ||||||||||||||||||
Sbjct 130 GATGCGAGCCTTAGAGCTGGTCGAAAAGGGT-TG-AGTTTTTCTGTCTCTTACCTCGTTG 187
Query 65 ATTCACTT-GGTTTAGCTAAAAAGGTAGCAGAATCGAT-T-ATAAGAAAAGTCAGTTTCG 121
||||| || |||||| |||||||||| ||||||||||| | | ||| |||||||| ||||
Sbjct 188 ATTCA-TTGGGTTTACCTAAAAAGGTCGCAGAATCGATCTCA-AAG-AAAGTCAGCTTCG 244
Query 122 AGAACAAGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAGATA 181
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 245 AGGACAAAGGCAATCCTGATTCTGTTCTGAGTCTATTGAGAAGTCATGGGTTCACTGATT 304
Query 182 CTCAGATCTCCAGCATCATTACGGACTATCCACTATTGCTCA-TAGCAGATGGTGA-AAA 239
|||||||||| |||||||||||||| ||||||| |||||| | |||| |||| ||| |||
Sbjct 305 CTCAGATCTCAAGCATCATTACGGATTATCCACAATTGCT-AGTAGCTGATGCTGAGAAA 363
Query 240 TTCCATTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCAC 299
|| ||||||||||| ||| ||||| ||||||| |||||||||||||| |||||||||||
Sbjct 364 -TCAATTGGTCCCAAGCTTCAGTTTCTGCAGTCCAGAGGAGCTTCAAGGTCTGAGCTCAC 422
Query 300 AGAGATTGTTTCTGA-AGTTCC-GAGAATCTTGGGAAAGAGAGGGCACAAAACTATCAGC 357
| ||||| ||| | |||||| || ||||||||| ||||||||| ||||||||||||||
Sbjct 423 TCATATTGTATCT-ACAGTTCCTGA-AATCTTGGGGAAGAGAGGGGACAAAACTATCAGC 480
Query 358 AGATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAGTTCGAAAAG 417
| |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 ATATACTATGATTTTGTTAAAGAGATTATAGAAGCGGATAAGAGTTCCAAGTTCGAAAAG 540
Query 418 TTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATGTTTTG 477
|||||||||||||||||| |||||||||||||||||||||| || |||| | |||||||
Sbjct 541 TTATGTCATTCTTTGCCAGAGGGTAGTAAGCAGGAGAACAAAATCAGAA-A--TGTTTTG 597
Query 478 GTTTTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTATTCTCC-TTGCTCATCTCTGATAA 536
||||||||||||||||| || ||||| |||||| | ||| || ||||| || |||||| |
Sbjct 598 GTTTTGAGAGAATTGGGTGTTCCTCAAAGGTTGTTGTTC-CCATTGCTTATATCTGATCA 656
Query 537 CGGACATGTATGTGGaaaaaaaaGATTT-GAAGAATCACTCAACAAGGTTGTTGAGATGG 595
| || ||| ||||||||| ||| |||| |||||||||||||| || |||||||||||||
Sbjct 657 CCAACCTGTCTGTGGAAAAGAAA-ATTTTGAAGAATCACTCAAGAAAGTTGTTGAGATGG 715
Query 596 GTTTTGATCCAACCAC-TGCAA-GTTTTGTCCGTGCTCTGCACG-TTATTCA-AGGATTT 651
|||||||||||||||| | ||| |||| ||| ||||| | | || || | || |||
Sbjct 716 GTTTTGATCCAACCACCT-CAAAGTTT-GTCAAAGCTCTT-AGGGTTGTTTACAG-ATTC 771
Query 652 AGCGACAAAACAATAGAAG-AAAAGGTCAATCTCTATAAAAGGTTAGGCTTTGATGTGGG 710
|||||||||| ||||||| ||||| | ||| ||| |||||| ||||||||| ||| ||
Sbjct 772 CGCGACAAAACTATAGAAGCAAAAGTT-AATGTCTGTAAAAGTTTAGGCTTTTCTGTTGG 830
Query 711 AGATGTATGGGAAATGTTCAAGAAGTTTCCAACATTTCTAGGACT-CTCGGAGAAGAAAA 769
||||||||||| |||||| ||||||| ||| | ||||| | | | ||| ||||| || |
Sbjct 831 AGATGTATGGGCAATGTTTAAGAAGTGTCCTTCCTTTCT-GAATTTCTCTGAGAACAAGA 889
Query 770 TAG 772
|||
Sbjct 890 TAG 892
Score = 309 bits (167), Expect = 4e-83
Identities = 352/441 (80%), Gaps = 14/441 (3%)
Strand=Plus/Plus
Query 725 TGTTCAAGAAGTTTCCAACATTTCTAGGACT-C-TCGGAGAAGAAAATAGCCAACTCCAT 782
|||| ||||||||||| ||| | | | | | | || ||| |||| ||| ||||||||
Sbjct 950 TGTTGAAGAAGTTTCC-ACAATGC-ATTAATGCTTCAGAGCAGAAGATAATGAACTCCAT 1007
Query 783 TGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTGTGGTCATGGTCAAGCGCTT 842
|||||||||| || || ||||||| | |||||||||| ||| | || | |||||||||
Sbjct 1008 TGAAACATTTCTAGGCTTAGGATTTAGCAGAGATGAGGTTGCAATGATAGCCAAGCGCTT 1067
Query 843 TCCTCCGTGCATTGGA-TGT-TCTGCAGAGTCGGTGAAGAAGAAGACTGAATTTCTGGTA 900
||||| ||| || | | | ||||||||| | |||||||| |||||||| ||||||||
Sbjct 1068 TCCTCAATGCCTT--ATTTTATCTGCAGAGACAGTGAAGAAAAAGACTGAGTTTCTGGTG 1125
Query 901 AAGAAGATGAATTGGCCACTAAAGGCTGTGGCTTCATTCCCT-CAGGTAATTGGATACAG 959
||||||||||||||||||||||||||||||| |||| |||| | |||| ||||||||||
Sbjct 1126 AAGAAGATGAATTGGCCACTAAAGGCTGTGGTTTCAACCCCTGC-GGTACTTGGATACAG 1184
Query 960 CCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCTCATCTCAAAAGGATT 1019
| |||||||||||||| ||||||||||||||||||| |||| |||||| || |||||||
Sbjct 1185 CTTAGAGAAGAGGACTATCCCAAGGTGTAATGTAATTAAAGCTCTCATGTCCAAAGGATC 1244
Query 1020 GCTCGGAAGTGAACTCCCTCCATTGCCGTGTGTGTTG-TCAAT-TACCGATCCAGCTTTC 1077
||| ||||||||||||||| | || ||| ||| ||| | | | |||| || || |||
Sbjct 1245 GCTTGGAAGTGAACTCCCTGGAATGTCGTCTGTTTTGGT-A-TGTACCAATGAAGAATTC 1302
Query 1078 TTAAACAAGTATGTGGTGAAACATGATGACACGCAGCTCGTGCGTGAGTTAATCGCTATC 1137
||| || ||||||| ||| |||||||||| | || | || | |||||| || |||||
Sbjct 1303 TTATGCAGGTATGTGAAGAACCATGATGACAAGAAGATAGTACCTGAGTTGATGGCTATT 1362
Query 1138 TTCACCAAAAATCGTGTTTCA 1158
|||||| | |||| ||||||
Sbjct 1363 TTCACCGGAGATCGCGTTTCA 1383
> AT1G62150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22970029-22971764 REVERSE
LENGTH=1736
Length=1736
Score = 719 bits (389), Expect = 0.0
Identities = 656/780 (84%), Gaps = 38/780 (5%)
Strand=Plus/Plus
Query 2 TGCTGATGTGAGTC-TTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTC 60
|||||||||||| | |||||||| ||| ||||||||| ||| ||||||||||||||||||
Sbjct 310 TGCTGATGTGAG-CTTTAGAGATAGTCGAAAAGGTAACAAC-TTTACTGTCTCTTACCTC 367
Query 61 GTTGATTCACTT-GGTTTAGCTAAAAAGGTAGCAGAATCGAT-TATAAGAAAAGTCAGTT 118
||||||||| || ||||||||| |||| | ||||||||||| | | | ||||||||||
Sbjct 368 GTTGATTCA-TTGGGTTTAGCTTCAAAGCTCGCAGAATCGATCTCGATG-AAAGTCAGTT 425
Query 119 TCGAGAACAAGGGCAATCCTGATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGGTTCACA 177
||||||||||||||||||||||| | ||||||| |||| || |||||||||| |||||||
Sbjct 426 TCGAGAACAAGGGCAATCCTGATACAGTTCTGAATCTTCTT-AGAAGTCATGAGTTCACA 484
Query 178 GATACTCAGATCTCCAGCATCATTACGGACTATCC-ACTATTGCTCATAGCAGATGGTGA 236
||| |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||
Sbjct 485 GATTCTCAGATCTCCAGCATCATTTCGGATTATCCAAC-ATTGCTTGTAGCAGATGCTGA 543
Query 237 AAATTCCA-TTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGC 295
||||| || |||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 544 AAATT-CACTTGGTCCCAAGCTTCTGTTGATGCAGTCTAGAGGAGCTTCAAGCTCTGAGC 602
Query 296 TCACAGAGATTGTTTCTGAAGTTCCGAGAATCTTGGGAAAGAGAGGGCACAAAACTATCA 355
|||| |||||||||||| ||||||| | |||||| |||| || |||| |||||| ||||
Sbjct 603 TCACTGAGATTGTTTCTAAAGTTCCTAAAATCTTAGGAATGAAAGGGGACAAAAGTATCG 662
Query 356 GCAGATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAGTTCGAAA 415
||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 663 GCAGATACTATGATATCGTCAAAGAGATTATAGAAGCGGATAAGAGCTCCAAGTTCGAAA 722
Query 416 AGTTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATGTTT 475
|| | |||||||||||||| ||||||||||||||||||| || || || ||| ||| |
Sbjct 723 AGCTGTGTCATTCTTTGCCTGAGGGTAGTAAGCAGGAGAATAAAATCAG--GAA-TGTAT 779
Query 476 TGGTTTTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTATTCTCCTTGCTCATCTCTGATA 535
||||||||||||| ||||| |||||||| |||||| ||||||| |||||| ||||| ||
Sbjct 780 TGGTTTTGAGAGATTTGGGTGTGCCTCAAAGGTTGTTATTCTCATTGCTCTTCTCTAATC 839
Query 536 ACGGACATGTATG-TG-G-aaaa-aaaaGATTTGAAGAATCACTCAACAAGGTTGTTGAG 591
|| ||||| || || | |||| ||||| |||||||||||||||||||||||||||| |
Sbjct 840 AC---CATGTCTGCTGTGGAAAAGAAAAG-TTTGAAGAATCACTCAACAAGGTTGTTGGG 895
Query 592 ATGGGTTTTGATCCAACCACTGCAA-GTTTTGTCCGT-GCTCT--GCACGTTATTCAAGG 647
|||||||||||||| |||||| ||| |||| || | ||| | ||| || || | ||
Sbjct 896 ATGGGTTTTGATCCCACCACTCCAAAGTTT-GTG-GAAGCTTTATGCA--TTGTTTACGG 951
Query 648 ATTTAGCGACAAAACAATAGAAGAAAAGGTCAATCTCTATAAAAGGTTAGGCTTTGA-TG 706
||| |||||||||| | |||||||||| ||||| |||| || || || ||||| | ||
Sbjct 952 ATTGAGCGACAAAAGACTAGAAGAAAACTTCAATGTCTACAAGAGATTTGGCTTA-ACTG 1010
Query 707 TGGGA-GATGTATGGGAAATGTTCAAGAAGTTTCCAACATTTCTAGGACT-CTCGGAGAA 764
| | |||||||||||| | |||||||||| || | ||||| ||| | ||| |||||
Sbjct 1011 TAA-ACGATGTATGGGAACTTTTCAAGAAGTGCCCTGCCTTTCTTGGA-TACTCTGAGAA 1068
Score = 351 bits (190), Expect = 7e-96
Identities = 328/392 (84%), Gaps = 19/392 (5%)
Strand=Plus/Plus
Query 775 AACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAGAGATGAGATTGTGGTCATGGTC 834
|||||||| ||||||||| || || ||||||||| |||||||||| |||| | ||||||
Sbjct 1184 AACTCCATGGAAACATTTATAGGCTTAGGATTCAGCAGAGATGAGTTTGTCATGATGGTC 1243
Query 835 AAGCGCTTTCCTCCGTGCATTGGATGTTCTGCAGAG-TCGGTGAAGAAGAAGACTGAATT 893
||| || |||||| ||||||||||| |||||||||| | |||||||||||||||||| ||
Sbjct 1244 AAGTGCCTTCCTCAGTGCATTGGATATTCTGCAGAGAT-GGTGAAGAAGAAGACTGAGTT 1302
Query 894 TCTGGTAAAGAAGATGAATTGGCCACTAAAGGCT-GTGGCTTCATTCCCTCAGGTAATTG 952
| |||| |||||||||||||||||||| |||| | | ||| |||||||||||| |||
Sbjct 1303 TGTGGTGAAGAAGATGAATTGGCCACTTAAGG-TCATTACTTTGTTCCCTCAGGTACTTG 1361
Query 953 GATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGTTCTCATCTCAA 1012
|||| ||| | ||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 1362 GATATAGCATGGAGAAGAGGACTGTCCCAAGGTGTAATGTAATCAAAGCTCTCATGTCCA 1421
Query 1013 AAGGATTGCTCGGAAGTGAACTCCCTCCATTGCCGTGTGTGTTGTCAAT-TACCGATCCA 1071
|||||||||| ||||| |||||||||||| || ||| ||| ||| || | |||||||| |
Sbjct 1422 AAGGATTGCTTGGAAGCGAACTCCCTCCAATGGCGTCTGTTTTGGCA-TGTACCGATC-A 1479
Query 1072 G-CTTTCTTAAACAAG-TATGTGGT-GAAACATGATGACACGCAGCTCGTGCGTGAGTTA 1128
| | |||||||| ||| |||||||| || |||||||| | |||| |||| ||||||
Sbjct 1480 GACCTTCTTAAA-AAGGTATGTGGTTGAG-CATGATGAAA---AGCTGGTGCTTGAGTTG 1534
Query 1129 ATCG-CTATCTTCA-CCAAAAATCGTGTTTCA 1158
|| | ||||||||| |||| | ||||| |||
Sbjct 1535 AT-GTCTATCTTCAACCAAGAC-CGTGTCTCA 1564
> AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22957876-22959711 REVERSE
LENGTH=1836
Length=1836
Score = 627 bits (339), Expect = 1e-178
Identities = 625/755 (83%), Gaps = 52/755 (7%)
Strand=Plus/Plus
Query 4 CTGATGTGAGTCT-TAGAGATGGTCAAAAAGGT-AAGAACTTTTACTGTCTCTTACCTCG 61
||||| |||| || |||||||||| |||| || |||||| |||||||||||||||||||
Sbjct 348 CTGATTTGAG-CTCAAGAGATGGTCGAAAA-GTGAAGAAC-TTTACTGTCTCTTACCTCG 404
Query 62 TTGATTCACTTGG-TTTAGCTA-AAAAGGTAGCAGAATCGAT-T-ATAAGAAAAGTCAGT 117
|||||||| |||| |||||||| |||| | || ||||| || | | |||||| ||||||
Sbjct 405 TTGATTCA-TTGGGTTTAGCTACAAAAC-TCGCTGAATCAATCTCA-AAGAAA-GTCAGT 460
Query 118 TTCGAGAACAAGGGCAATCCTGATTCT-GTTCTGAGTCTTTTGAGAAGTCATGGGTTCAC 176
|||| |||||||||||||||||||| | |||||||||||||| |||||| ||||||||||
Sbjct 461 TTCGTGAACAAGGGCAATCCTGATT-TAGTTCTGAGTCTTTTTAGAAGTTATGGGTTCAC 519
Query 177 AGATACTCAGATCTCCAGCATCATTACGGACTATCC-ACTATTGCT-CATAGCAGATGGT 234
| || ||||||||||||||||||||||||| ||||| | |||||| | || ||||| |
Sbjct 520 AAATTCTCAGATCTCCAGCATCATTACGGATTATCCTAG-ATTGCTTC-TAATAGATGCT 577
Query 235 GA-AAATTC-CATTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTG 292
|| |||| | | ||| | ||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 578 GAGAAAT-CAC-TTGATATCAAGCTTCAGTTTTTGGAGTCTAGAGGAGCTTCAAGCCCTG 635
Query 293 AGCTCACAGAGATTGTTTCTGA-AGTTCCGAGAATCTTGGGAAAGA--GAGGGCACAAAA 349
||||||| ||||||||||| | |||||| | ||| ||||||| || ||||| | ||
Sbjct 636 AGCTCACTCAGATTGTTTCT-ACAGTTCCTAAAATATTGGGAATGAAAGAGGG-A-AAGT 692
Query 350 CTATCAG-CAGATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAG 408
|| | || ||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 693 CTCT-AGGCAGATACTATGATTTCGTCAAAGAGATTATAGAAGCAGATAAGAGTTCCAAG 751
Query 409 TTCGAAAAGTTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAG-AACAACATTAGAAG 467
| ||||| || ||||| |||||||| ||| || || ||||| | || || || ||||
Sbjct 752 TACGAAACTTTGTGTCAACCTTTGCCAGAGGCTAATAGGCAGG-GTAATAAAATCAGAA- 809
Query 468 AAATGTTTTGGTT-TTGAGAGAATTGGGCGTGCCTCAGAGGTTGCTATTCTCCTTGCTCA 526
| ||||| |||| || ||||| ||||| |||||||||| |||| |||||||||||||||
Sbjct 810 A--TGTTTCGGTTCTT-AGAGACTTGGGTGTGCCTCAGAAGTTGTTATTCTCCTTGCTCA 866
Query 527 TCTCTGATAACGGACATGTATGTGGaaaaaaaaGATTT-GAAGAATCACTCAACAAGGTT 585
|||||||| | || ||| ||||||||| ||| |||| |||||||||||||| ||||||
Sbjct 867 TCTCTGATGCCCAACCTGTTTGTGGAAAAGAAA-ATTTTGAAGAATCACTCAAGAAGGTT 925
Query 586 GTTGAGATGGGTTTTGATCCAACCAC-TGCAA-GTTTTGTCCGTGCTCT--GCAC-GTTA 640
|||||||||||||||||||||||||| | ||| |||| |||| ||||| | | |||
Sbjct 926 GTTGAGATGGGTTTTGATCCAACCACCT-CAAAGTTT-GTCCAAGCTCTTAGGGCTGTT- 982
Query 641 TTCAAGGATTTAGCGACAAAACAATAGAAGAAA-AGGTCAATCTCTATAAAAGGTTAGGC 699
| || | ||| | |||||||||||||||||||| || | ||| | |||||| |||| |||
Sbjct 983 TACA-G-ATTCACCGACAAAACAATAGAAGAAAGAGTT-AATGTGTATAAAGGGTTCGGC 1039
Query 700 TTTGATGTGGGAGATGTATGGGAAATGTTCAAGAA 734
|||| ||||| ||||||||||| ||||||||||||
Sbjct 1040 TTTGCTGTGGAAGATGTATGGGCAATGTTCAAGAA 1074
Score = 250 bits (135), Expect = 2e-65
Identities = 346/441 (78%), Gaps = 41/441 (9%)
Strand=Plus/Plus
Query 753 ACTCTCGGAGAAGAAAATAGCCAACTCCATTGAAACATTTGTAAGCCTAGGATTCACCAG 812
||| || ||| |||| ||| ||||||||||||| |||| || ||||||| |||| |||
Sbjct 1199 ACT-TCAGAGCAGAAGATATTGAACTCCATTGAAATATTTCTAGGCCTAGGCTTCAGCAG 1257
Query 813 AGATGAGATT-GTGGTC-ATGGTCAAGCGCTTTCCTCCGTG-CATTGGA-TGT-TCTGCA 867
||||||| || | | ||||| ||||||||||||| ||| | || | | | ||||||
Sbjct 1258 AGATGAG-TTCAT-AACAATGGTTAAGCGCTTTCCTCAGTGTC-TT--ATTTTATCTGCA 1312
Query 868 GAGTCGGTGAAGAAGAAGACTGAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGCT 927
||| ||||||||||||||| ||| ||| |||| |||||||||||||||||||| |||| |
Sbjct 1313 GAGACGGTGAAGAAGAAGATTGAGTTTGTGGTGAAGAAGATGAATTGGCCACTGAAGGAT 1372
Query 928 GTGGCTTC-ATTCCCTCA-GGTAATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGT 985
|||| ||| | | ||| | |||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 1373 GTGGTTTCAAAT-CCT-ACGGTACTTGGATACAACCTGGAGAAGAGGACTGTCCCAAGGT 1430
Query 986 GTAATGTAATCAAAGTTCTCATCTCAAAAGGA-TT---G----CTC-GGAAGTGAACTCC 1036
||||||| || ||| |||||| |||||| || || | | | |||||||||||||
Sbjct 1431 GTAATGTTATTGAAGCTCTCATGTCAAAAAGACTTCTCGGAGACACAGGAAGTGAACTCC 1490
Query 1037 CTCCATTGCCGTGTGTGTTG-TCAAT-TACCGATCCAGCT-TTCTTAAACAAG-TATGTG 1092
||||| || ||| ||| ||| | | | ||| ||| || | |||||||| ||| ||||||
Sbjct 1491 CTCCAATGTCGTCTGTTTTGGT-A-TGTACTGATG-AGTTGTTCTTAAA-AAGGTATGTG 1546
Query 1093 -GTGAAACATGATGACACGCAGCTCGTGCGTGAGTTAATCG-CTATCTT-CACCAAAAAT 1149
| ||| |||| ||||| | |||| |||| |||||| || | |||| || ||||| | |
Sbjct 1547 AG-GAACCATGGTGACAAGGAGCTGGTGCTTGAGTTGAT-GACTAT-TTACACCAGAGGT 1603
Query 1150 CGTGTTTCACTCACT-GATCA 1169
||||| ||| ||| | |||||
Sbjct 1604 CGTGTATCA-TCA-TAGATCA 1622
> AT1G61990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22911205-22912935 FORWARD
LENGTH=1731
Length=1731
Score = 512 bits (277), Expect = 3e-144
Identities = 911/1199 (76%), Gaps = 115/1199 (10%)
Strand=Plus/Plus
Query 2 TGCTGATGTGAGTC-TTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTC 60
|||||||||||| | |||||||||||| |||||| |||||| ||||| ||||||||||||
Sbjct 365 TGCTGATGTGAG-CATTAGAGATGGTCGAAAAGGGAAGAAC-TTTACAGTCTCTTACCTC 422
Query 61 GTTGATTCACTT-GGTTTAGCTAAAAAGGTAGCAGAATCGATTAT-AAGAAAAGTCAG-T 117
||||||||| || |||||| |||||||| | || ||||| | | | ||| ||||| || |
Sbjct 423 GTTGATTCA-TTGGGTTTATCTAAAAAGCTCGCTGAATCCA-TCTCAAGGAAAGTTAGCT 480
Query 118 TTCGAGAACAAGGGCAATCCTGATTCTGTTCTGAGTCT-TTTGAGAAGTCATGGGTTCAC 176
|| ||| |||||| |||||||||||||||||| ||||| ||| |||||| | ||||||||
Sbjct 481 TT-GAGGACAAGGTCAATCCTGATTCTGTTCTAAGTCTGTTT-AGAAGTTACGGGTTCAC 538
Query 177 AGATACTCAGATCTCCAGCATCATTACGGACTATCCACTATTGCTCATAGCAGATGGTGA 236
|||| |||||||||| | |||||||||||| ||||| ||||||| ||||||||| | |
Sbjct 539 AGATTCTCAGATCTCTACCATCATTACGGATTATCCGTTATTGCTTGTAGCAGATGCT-A 597
Query 237 A-AATTCCA-TTGGTCCCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAG 294
| || || |||||| ||| ||| || || |||||||||||||||||||||||||||||
Sbjct 598 AGAA-AGCACTTGGTCGCAAGCTTCAGATTCTGCAGTCTAGAGGAGCTTCAAGCTCTGAG 656
Query 295 CTCACAGAGATTGTTTCTGA-AGTTCCGAGAATCTTGGGAAAGAGAGGGCACAAAACTAT 353
|||| |||||||||||| | ||| ||||||||||| ||||||| | | ||||
Sbjct 657 ATCACTGAGATTGTTTCT-ACAGTACCGAGAATCTTAGGAAAGA-A----AT----CTAT 706
Query 354 CAGCAG-ATACTATGATACCGTCAAAGAGATTGTAGAAGCGGATAAGAGTTCCAAGTTCG 412
| | | |||||||||| | |||||||| ||| ||| ||| |||| |||||| |
Sbjct 707 TA-CTGTATACTATGATGCTGTCAAAGACATTATAGTAGCCGATACGAGTTC---G---- 758
Query 413 AAAAGTTATGTCATTCTTTGCCACAGGGTAGTAAGCAGGAGAACAACATTAGAAGAAATG 472
| |||||| | || ||||||||| | || || ||| || || ||| | ||
Sbjct 759 A---GTTATGA-ACTC----CCACAGGGTTCTCAG--GG-GAATAAAATCCGAA-A--TG 804
Query 473 TTTTGGTTTTGAGAGAATTGGGCGTGCCT-CAGAGGTTGCTATT-CTCCTTGCTCATCTC 530
| | || |||||||||||| ||| ||||| | ||||| |||| | |||||||| ||||
Sbjct 805 TATCGGCTTTGAGAGAATTAGGCATGCCTTCTC-GGTTGTTATTAC-CCTTGCTCGTCTC 862
Query 531 TGATAA-CGGA-CATGTATGTGGaaaaaaaaGATTT-GAAGAATCACTCAACAAGGTTGT 587
| || || | | ||| ||||||||| ||| |||| || | ||| || || ||||||||
Sbjct 863 C-A-AATCGCAGCCTGTGTGTGGAAAAGAAA-ATTTTGATGCATCCCTTAAGAAGGTTGT 919
Query 588 TGAGATGGGTTTTGATCCAACCACTGC-AAGTTTTGTCCGT-GCTCTGC--ACGTTATT- 642
||||||||| |||||||| ||||| | || ||| || | ||| ||| | | | ||
Sbjct 920 TGAGATGGGGTTTGATCCCACCACCACTAAATTT-GTTT-TAGCTTTGCGGATGCT-TTA 976
Query 643 C-AAGGATTTAGCGACAAAACAATAGAAGAAAAGGTCA-A-TCTCTATAAAAGGTTAGGC 699
| || || ||||| ||||| || |||||||| || | ||| | || ||| |||||
Sbjct 977 CCAA--ATG-AGCGAGAAAACGATTGAAGAAAAAGTTGTAGTCT-T-TAGAAGTTTAGGT 1031
Query 700 TTTGA-TGTGGGA-GATGTATGGGAAATGTTCAAGAAGTTTCCAACA-TTTCTAGGAC-T 755
||| | ||||| | |||||||||||||| ||||||||| ||| | ||| | | | |
Sbjct 1032 TTT-ACTGTGG-ATGATGTATGGGAAATTTTCAAGAAGACTCCTTCTGTTT-T-GAAAGT 1087
Query 756 CTCGGAGAAGAAAATAGCCAACTCCATTGAAACATTTGTA-AGCCTAGGAT-TCACCAGA 813
||| ||||||| ||| || || |||||| ||| || | |||||||| | | ||||
Sbjct 1088 CTCCAAGAAGAAGATATTGAAGTCGGCTGAAACGTTTCTAGA-CCTAGGATAT-AGCAGA 1145
Query 814 GATGAGATTGTGGTCATGGTCAAGCGCTT-TCCTCCGTGCATTGGATGTTCTGCAGAGTC 872
| |||| || || | ||||| ||||| || |||||| ||||||| || ||||| ||||||
Sbjct 1146 GCTGAGTTTCTGATGATGGTTAAGCG-TTATCCTCCTTGCATTGAATATTCTGTAGAGTC 1204
Query 873 GGTGAAGAAGAAGACTGAATTTCTGGTAAAGAAGATGAATTGGCCACTAAAGGC-TGTGG 931
|| || ||||||| ||| |||||||| ||||||||||| ||||||| ||| || | |||
Sbjct 1205 TGTTAAAAAGAAGAATGAGTTTCTGGTGAAGAAGATGAAATGGCCACGAAACGCCT-TGG 1263
Query 932 CTT--CATTCCCTCAGGTAATTGGATACAGCCTAGAGAAGAGGACTGTCCCAAGGTGTAA 989
|| || ||||||||| ||||||||||| | |||||||||| | | |||||||||||
Sbjct 1264 TTTTGCA--CCCTCAGGTGTTTGGATACAGCATGGAGAAGAGGATTATACCAAGGTGTAA 1321
Query 990 TGTAATCAAAGTTCTCATCTCAAAAGGATTGCTC-G---G--AAGTGAACTCCCTCCATT 1043
|| || ||| |||| | || |||||| ||||| | | ||||||||| ||| || |
Sbjct 1322 CATACTCGAAGCTCTCTTGTCGAAAGGACTGCTCAGAAAGGGAAGTGAACTACCTGCAGT 1381
Query 1044 G-CCGTGTGTGTTGTCAAT-TACCGATCCAGC-TTTCTTAAACAAGTATGTGGTGAAACA 1100
| || | ||| ||||| | ||||||| || ||| ||| ||| ||||||| |||| ||
Sbjct 1382 GTCC-TCTGTTTTGTCG-TGTACCGATGAAGGATTT-TTAGACAGGTATGTGATGAAGCA 1438
Query 1101 TGATGACACGCAGCTCGTGCGTGA-GTTAATCGCTATCTTCACCAAAAATCGTGTTTCA 1158
| || | |||| |||| | | ||| || ||||| ||||||||| | ||||||||
Sbjct 1439 C-A--AC--G-AGCTGGTGCCT-ACGTTGATGGCTATATTCACCAAAGGTAGTGTTTCA 1490
> AT1G62490.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:23130405-23131533 REVERSE
LENGTH=1005
Length=1005
Score = 228 bits (123), Expect = 1e-58
Identities = 171/193 (89%), Gaps = 7/193 (4%)
Strand=Plus/Plus
Query 2 TGCTGATGTGAGTCTTAGAGATGGTCAAAAAGGTAAGAACTTTTACTGTCTCTTACCTCG 61
|||||||||||| |||| |||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 255 TGCTGATGTGAGCCTTATAGATAGTCAAAAAGGTAAGAAC-TTTACAGTCTCTTACCTCG 313
Query 62 TTGATTCACTT-GGTTTAGCTAAAAAGGTAGCAGAATCGA-TT-ATAAGAAAAGTCAGTT 118
|||||||| || |||||| |||||||| | || ||||||| || | ||| ||| | || |
Sbjct 314 TTGATTCA-TTGGGTTTACCTAAAAAGCTCGCTGAATCGATTTCA-AAG-AAATTTAGAT 370
Query 119 TCGAGAACAAGGGCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAG 178
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCGAGGACAAGGCCAATCCTGATTCTGTTCTGAGTCTTTTGAGAAGTCATGGGTTCACAG 430
Query 179 ATACTCAGATCTC 191
| ||||||||||
Sbjct 431 TTTCTCAGATCTC 443
> AT1G62055.1 | Symbols: | pseudogene, hypothetical protein |
chr1:22940331-22940864 REVERSE LENGTH=534
Length=534
Score = 215 bits (116), Expect = 9e-55
Identities = 257/322 (80%), Gaps = 21/322 (7%)
Strand=Plus/Plus
Query 20 AGATGGTCAAAAAGGTAAGAACTTTT-ACTGTCTCTTACCTCGTTGATTCACTT-GG-TT 76
|||||||| ||||||| || | |||| ||| ||||||||||| |||||||| || || ||
Sbjct 183 AGATGGTCGAAAAGGTCAG-A-TTTTCACTATCTCTTACCTCATTGATTCA-TTGGGATT 239
Query 77 TAGCTAAAAAGGTAGCAGAATCGATTAT-AAGAAAAGTCAGTTTCGA-GAACAAGG-GCA 133
| | ||||| | || ||||| | | | || ||||| || |||| | | ||| | |
Sbjct 240 AACCGAAAAA-CTCGCTGAATCCA-TCTCGAGGAAAGTAAGCGTCGATG-A-GAGGAGAA 295
Query 134 ATCCTGATTCTGTTCTGAGTCTT-TTGAGAAGTCATGGGTTCACAGATACTCAGATCTCC 192
|||||||||||||||||| |||| || |||||| |||| ||||||||| ||||||||||
Sbjct 296 ATCCTGATTCTGTTCTGAATCTTCTT-AGAAGTTATGGTTTCACAGATTCTCAGATCTCA 354
Query 193 AGCATCATTACGGACTATCCACTATTGCTCATAGCAGATGGTGAA-AATTCCA-TTGGTC 250
|| |||||||| | ||||| | ||||| |||| ||||| | || || | || ||| ||
Sbjct 355 AGTATCATTACAAATTATCCTCGGTTGCTTATAGTAGATGCT-AAGAAAT-CACTTGCTC 412
Query 251 CCAAACTTAAGTTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACAGAGATTGTTT 310
|||| ||| || ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 413 CCAAGCTTCAGGTTTTGCAGTCTAGAGGAGCTTCAAGCTCTGAGCTCACTGAGACTGTTT 472
Query 311 CTGAA-GTTCCGAGAATCTTGG 331
|| | ||||| | ||||||||
Sbjct 473 CT-ACCGTTCCTAAAATCTTGG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5