BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924799

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13680.1 | Symbols:  | F-box and associated interaction doma...   429    1e-119
  AT1G11806.1 | Symbols:  | pseudogene, hypothetical protein, lik...  80.5    1e-14 


> AT3G13680.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 343/395 (87%), Gaps = 13/395 (3%)
 Strand=Plus/Plus

Query  78   aaCAACCGTAATCACAAAATCTTGAGGATTTTCAATCTGTATCCAAGCAGAAACCACGAT  137
            ||||||||||| |||||||| |||||||||||| || ||||||||||||| |||| || |
Sbjct  442  AACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGTATCCAAGCAGCAACCGCGTT  501

Query  138  TTTAGGTACCAAGTCTATGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCAAACCA  197
            ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||  || 
Sbjct  502  TTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCATTCCT  561

Query  198  GAGTGGAATATACACTCTCATCAACGTGGCGTGTCTTTGAAGGGGAATACTTATTTTCCT  257
            |||||| ||||||| ||||||   ||||||| ||||||||| |||||| |||||||||||
Sbjct  562  GAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTATTTTCCT  621

Query  258  GTGCATAAGAAAAGAACC-GTGGGAGGA-----G----TAAATATTGAAGATGTTCTAGT  307
            | ||| |||||| ||| | |||||||||     |    |||||||||||||||||||| |
Sbjct  622  GCGCAAAAGAAA-GAAACAGTGGGAGGAATAAAGACAATAAATATTGAAGATGTTCTACT  680

Query  308  TTGTTTTGATTTTACAAAAGAGAGATTTGGACCGCCTCTGCCACTGCCATTTAACTCTTA  367
            |||||| ||||||||||  ||||||||||||||||||||||||||||| ||| |||||||
Sbjct  681  TTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCACTGCCGTTTCACTCTTA  740

Query  368  CAATGCAGAAAATTTTGTGTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCTATGTTATA  427
            |||||||||   ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  741  CAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATA  800

Query  428  TCAACGCTGGGGA--ATTTGAGACTTTTGAGAttt  460
            ||||||||||||   |||||||||  | |||||||
Sbjct  801  TCAACGCTGGGGGGCATTTGAGACAATCGAGATTT  835


> AT1G11806.1 | Symbols:  | pseudogene, hypothetical protein, likely 
a tandem duplication of the immediatly downstream hypothetical 
protein which has since degenerated. | chr1:3988346-3989398 
FORWARD LENGTH=1053
Length=1053

 Score = 80.5 bits (43),  Expect = 1e-14
 Identities = 100/127 (79%), Gaps = 5/127 (4%)
 Strand=Plus/Plus

Query  309  TGTTTTGATTTTACAAAAGAGAGATTTGGACCGCCTCTGCCACTGCCATTTAACTCTTA-  367
            |||||||||||||||  ||| || |||||||||| ||| || || || ||| |||| || 
Sbjct  581  TGTTTTGATTTTACATCAGAAAGGTTTGGACCGCGTCTTCCTCTTCCGTTTCACTC-TAG  639

Query  368  CAATGCAGAAAATTTTG--TGTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCTATGTTA  425
              ||| || | | | ||  | | | |||||||| | || |||||||||||||||||||||
Sbjct  640  TGATGAAG-AGACTGTGACTCTATATATCTTGTATCAGAGAAGAGCAGCTCGCTATGTTA  698

Query  426  TATCAAC  432
            |||||||
Sbjct  699  TATCAAC  705



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5