BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924801

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46455.1 | Symbols:  | OxaA/YidC-like membrane insertion pro...   307    5e-83
  AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gat...   185    3e-46


> AT2G46455.1 | Symbols:  | OxaA/YidC-like membrane insertion protein 
| chr2:19069629-19071004 REVERSE LENGTH=868
Length=868

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 305/366 (83%), Gaps = 34/366 (9%)
 Strand=Plus/Plus

Query  1    TCTTTGAAGATAGAAGGAAAATGTCTTTTGTTCAACCAACGGGTTTTTCT-G-G-A--G-  54
            |||||||||||| ||||||||||||||||||||||  |  ||| |||||| | | |  | 
Sbjct  332  TCTTTGAAGATACAAGGAAAATGTCTTTTGTTCAATTAGTGGGGTTTTCTGGAGTATCGC  391

Query  55   TAT-T-G-C---TGTCGTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA  108
            ||| | | |   |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  TATGTAGACAGATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA  451

Query  109  ATGTTGTTG-AGGATCTCGTCTCTG-AGAAATCTGT--GGAA----G-CA--ATAGATGA  157
            ||||||||| || |||| |  |  | || ||| |||    ||    | ||  ||||||||
Sbjct  452  ATGTTGTTGAAGAATCT-G--T-GGAAGCAAT-TGTCACTAATGTCGCCACTATAGATGA  506

Query  158  GTGTACTGC-AGCAATTGAGAATTTTTCTTTCCCC-G-GGGACTTCGTGCAGTATGTGAT  214
            ||||||||| |  || ||||| | ||| ||||||| | |||| |||||||||||||||||
Sbjct  507  GTGTACTGCTA-TAACTGAGAGTGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGAT  563

Query  215  TAATGGAATCCATGAACTCACAGGCTTCAATTGGTGGATGTCGATTGTTCTTACGGCTTT  274
            |||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct  564  TAATGGAATCCACGAGCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTT  623

Query  275  TCTGGTTAGTGTACTGATGTCACCAGTTTCTATGCGGGTTCAGAAACAAGCTCTGGAACT  334
            ||| |||| |||||||||||||||||| ||||||||||||||||| | ||||||||| ||
Sbjct  624  TCTTGTTACTGTACTGATGTCACCAGTCTCTATGCGGGTTCAGAATCTAGCTCTGGAGCT  683

Query  335  ACAAAT  340
            ||||||
Sbjct  684  ACAAAT  689


> AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gated 
channel 12 | chr2:19065716-19069569 FORWARD LENGTH=3199
Length=3199

 Score =  185 bits (100),  Expect = 3e-46
 Identities = 122/132 (92%), Gaps = 3/132 (2%)
 Strand=Plus/Minus

Query  339   ATAGTAAAGTTGAGAAGCATCATTTTGGTGGCCAGATATTCAC-GTAAAAATGGTCTCGG  397
             |||||||||||||||||||||  |  |||||||||||||| || |||| || |||||| |
Sbjct  2787  ATAGTAAAGTTGAGAAGCATC-CTGGGGTGGCCAGATATT-ACAGTAACAACGGTCTCTG  2730

Query  398   AGCAGCAAAGGATCATGGCGAGATTGATAAGTCTGATGAGAGAATTTATTGACGTGGTGA  457
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2729  AGCAGCAAAGGATCATAGCGAGATTGATAAGTCTGATGAGAGAATTTATTGACGTGGTGA  2670

Query  458   AGAAGAAAGACA  469
             ||||||||||||
Sbjct  2669  AGAAGAAAGACA  2658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5