BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924804

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62490.1 | Symbols:  | Mitochondrial transcription terminati...   161    3e-39
  AT1G61960.1 | Symbols:  | Mitochondrial transcription terminati...   117    6e-26


> AT1G62490.1 | Symbols:  | Mitochondrial transcription termination 
factor family protein | chr1:23130405-23131533 REVERSE 
LENGTH=1005
Length=1005

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 117/131 (89%), Gaps = 4/131 (3%)
 Strand=Plus/Plus

Query  107  AGTTGAGATGGGTTTTGATCCGACCACTTCAAAGTTTGTCAAAGCTCTCAACGCCTTTTA  166
            |||||||||||||||||||||||||||  |||||||||||||||||||| |||  | |||
Sbjct  708  AGTTGAGATGGGTTTTGATCCGACCACCGCAAAGTTTGTCAAAGCTCTCCACGTATCTTA  767

Query  167  CCAAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTAATTAGGCT  226
            | |||||| |||||||||||||||||||||||||||||||||||||| ||||    ||||
Sbjct  768  CGAAATGAACGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAATGTTA----GGCT  823

Query  227  TTACTGTGGAA  237
            || ||||||||
Sbjct  824  TTGCTGTGGAA  834


> AT1G61960.1 | Symbols:  | Mitochondrial transcription termination 
factor family protein | chr1:22902150-22903837 FORWARD 
LENGTH=1688
Length=1688

 Score =  117 bits (63),  Expect = 6e-26
 Identities = 98/114 (86%), Gaps = 6/114 (5%)
 Strand=Plus/Plus

Query  108  GTTGAGATGGGTTTTGATCC-GACCACTTCAAAGTTTGTCAAAGCTCT-CAACGCCT-TT  164
            |||||||||||||||||||| ||  ||| ||||||| ||  ||||||| | | |  | ||
Sbjct  783  GTTGAGATGGGTTTTGATCCGGA-GACTACAAAGTTCGTTGAAGCTCTGCGA-G-TTATT  839

Query  165  TACCAAATGAGCGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTA  218
            ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  840  TACCGTATGAGTGACAAAACAATAGAAGAAAAAGTCAATGTCTACAAAAGGTTA  893



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5