BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924807 Length=706 Score E Sequences producing significant alignments: (Bits) Value AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 446 2e-124 AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 433 1e-120 AT1G62080.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 425 2e-118 AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 412 2e-114 AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22... 108 9e-23 > AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62220.1); Has 386 Blast hits to 125 proteins in 33 species: Archae - 6; Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:22941569-22942300 REVERSE LENGTH=732 Length=732 Score = 446 bits (241), Expect = 2e-124 Identities = 388/455 (85%), Gaps = 26/455 (6%) Strand=Plus/Plus Query 10 aaaaa-aaTCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTG 68 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 39 AAAAACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTG 98 Query 69 TGTGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 128 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 99 TGTGCCATTGTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 158 Query 129 TCTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGG-CACAAC 187 |||||||||||| |||||| |||||||||||||||||||||||||||| ||| | | | Sbjct 159 TCTCTTCCAAAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTCTTA-C 217 Query 188 TTACAGCAACT-CT-TACGTCTCTAGCTATGCTAGAGCTTCTAATGGTCCCAAAGGTCCA 245 ||||||| | | | |||||||||| |||||| |||| ||| ||||||||||||| Sbjct 218 TTACAGCGGCAGCAGT--GTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAAGGTCCA 275 Query 246 GACGCC-GATGCAGCCGAATA-TGGCT-CAACATA-TACCAAT-GGACAAGTCTAT-GCC 299 | ||| | |||| ||||| | ||||| || || | ||||| | ||||||||| || ||| Sbjct 276 GGGGCCAG-TGCATCCGAA-AGTGGCTACA-CA-AGTACCA-TCGGACAAGTC-ATTGCC 329 Query 300 AAGGGTCGCAAGGCAA-ACATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGA 358 |||||||||||||||| | |||||||| ||||| |||| |||||||| || |||| Sbjct 330 AAGGGTCGCAAGGCAAGAG-TTTCTTCTGCAAGTGCTTCTGCCGCTACAGGTGAGGCTGC 388 Query 359 AGCTGCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACT 417 |||||||| || ||| ||||||||||||||||||||||| ||| |||| |||| | | Sbjct 389 AGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGCA-T 447 Query 418 CAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG 452 ||||||||||||| |||||||| |||||||||| Sbjct 448 CAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAG 479 > AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1); Has 131 Blast hits to 122 proteins in 40 species: Archae - 0; Bacteria - 73; Metazoa - 10; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:22988196-22988844 FORWARD LENGTH=649 Length=649 Score = 433 bits (234), Expect = 1e-120 Identities = 385/456 (84%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 10 aaaaa-aaTCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTG 68 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 42 AAAAACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGCGTTTTG 101 Query 69 TGTGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACC 128 ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 102 TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATTAGGCACC 161 Query 129 TCTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTATGGCACAACT 188 ||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 162 TCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGGTATTACT 221 Query 189 TACAGCAACTCTT-ACGTCTCTAGCTATGCTAGAGCTT-CTAATGGTCCCAAAGGTCCAG 246 | ||||| | | | |||| ||||| ||||| | || | || |||||||||||||| Sbjct 222 TCCAGCAG-TAGTGATGTCTATAGCTCTGCTACTGGTTTC-AACAATCCCAAAGGTCCAG 279 Query 247 ACGCCGATGCAGCCGAATATGGCT-CAACATA-TACCAATGGACAAGTCTAT-GCCAAGG 303 |||| ||||| |||| |||||| || || | ||||| ||||||||| || ||||||| Sbjct 280 ACGCTAATGCATACGAAAATGGCTACA-CA-AGTACCAGCGGACAAGTC-ATTGCCAAGG 336 Query 304 GTCGCAAGGCAA-ACATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCT 362 |||||||||||| | |||||||| ||||| ||||| |||| ||| || ||| ||||| Sbjct 337 GTCGCAAGGCAAGAG-TTTCTTCTGCAAGTGCTTCTACCGCTAAAGGTGATGCTAAAGCT 395 Query 363 GCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAG 421 |||| || ||| ||||||||||||||||| ||||| ||| |||| || | | ||||| Sbjct 396 GCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGGCA-TCAAG 454 Query 422 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGTCAA 457 ||||||||| |||||||| ||||||||||| ||| Sbjct 455 GGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGCAA 487 > AT1G62080.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1); Has 118 Blast hits to 112 proteins in 34 species: Archae - 0; Bacteria - 43; Metazoa - 10; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:22946242-22946949 REVERSE LENGTH=708 Length=708 Score = 425 bits (230), Expect = 2e-118 Identities = 381/451 (84%), Gaps = 21/451 (5%) Strand=Plus/Plus Query 11 aaaaaaTCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTG 70 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 34 AAAAAATCAAAAGATGAATGCCACAAAGTTTCTTGTGCTTCTCGTGATTGGCGTTTTGTG 93 Query 71 TGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTC 130 ||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |||| Sbjct 94 TGCCATTGTCACCGCAAGGCAGGTCAAAGATTTGTCCACAGAGACCAAATTAGGGGCCTC 153 Query 131 TCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTA-TGGCACAACTT 189 |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 154 TCTTCCAAAAACGACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCTCAACTT 212 Query 190 ACAGCAACT-CTTACGTCTC-T-AGCTATGCTAGA-GCTTCTAATGGTCCCAAAGGTCCA 245 ||||| | | | || || | |||||||||| | | || ||| ||||||||| ||| Sbjct 213 TCAGCAGCAGC--A-GTGTCGTTAGCTATGCTA-ATGGTTTTAACAATCCCAAAGGCCCA 268 Query 246 GACGCCGATGCAGCCGAATA-TGGCTCAACATATACCAATGGACAAGTCTA-TGCCAAGG 303 | ||| ||||| |||| | |||||| |||| ||||| ||||||||| | |||||||| Sbjct 269 GGGGCCAATGCATTCGAA-AGTGGCTCCACATTTACCAGCGGACAAGTC-ACTGCCAAGG 326 Query 304 GTCGCAAGGCAA-ACATTTCTTCTAAAAGTGGTTCTAAAGCTACAGGAGAAGCTGAAGCT 362 |||||||||||| | |||||||| ||||| ||||| |||||||| || |||| |||| Sbjct 327 GTCGCAAGGCAAGAG-TTTCTTCTGCAAGTGCTTCTACCGCTACAGGTGAGGCTGCAGCT 385 Query 363 GCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTCAAG 421 |||| || ||| ||||||||||||||||||||||| ||| |||| |||| | ||||| Sbjct 386 GCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGCA-TCAAG 444 Query 422 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG 452 ||||||||| |||||||| |||||||||| Sbjct 445 GGTGAAGGG---TTCCTCTGAGAAGAAGAAG 472 > AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62080.1); Has 163 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 109; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:22913441-22914146 FORWARD LENGTH=706 Length=706 Score = 412 bits (223), Expect = 2e-114 Identities = 385/459 (84%), Gaps = 27/459 (6%) Strand=Plus/Plus Query 11 aaaaaaTCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCGTTTTGTG 70 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 38 AAAAAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTGTG 97 Query 71 TGCCATTGTCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTC 130 ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||| Sbjct 98 TGCCATTGTCACCGCAAGGCAGGTCAAAGATTTGTCCACGGAGACCAAATTAGGGGCCTC 157 Query 131 TCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTTA-TGGCACAACTT 189 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 158 TCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCACAACTT 216 Query 190 ACAGCAACT-CTTACGTCTC-T-AGCTATGCTAGA-GCTTCTAATGGTCCCAAAGGTCCA 245 |||||| | | | || || | |||||||||| | | || ||| ||||||||||||| Sbjct 217 ACAGCACCAGC--A-GTGTCGTTAGCTATGCTA-ATGGTTTTAACAATCCCAAAGGTCCA 272 Query 246 GACGCCGATGCAGCCGAATA-TGGCTCAACATAT--ACCAATGGACAAGTCTA-TGCCAA 301 | ||| || || |||| | || | ||||| || |||| ||||||||| | |||||| Sbjct 273 GGGGCCAATTCATTCGAA-AGTG-C-CAACACATTTACCAGCGGACAAGTC-ACTGCCAA 328 Query 302 GGGTCGCAAGGCAA-ACATTTCTTCTAAAAGTGGTTCTAAAGCT-ACAGGAGAAGCTGAA 359 |||||||||||||| | ||||||||| ||||| |||| ||| | ||| || |||| | Sbjct 329 GGGTCGCAAGGCAAGAG-TTTCTTCTACAAGTGCTTCTGCCGCTGA-AGGCGATGCTGCA 386 Query 360 GCTGCAGCGAATCGAAAAGCTGCTGCTGCACGTGCAAAAGGTTCGGTAAAATCCG-ACTC 418 ||||||| || ||| ||||||||||||||||||||||| ||| |||| |||| | || Sbjct 387 GCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAACGGTAAGGTAGCTTCCGCA-TC 445 Query 419 AAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGTCAA 457 |||||||||||| |||||||| ||||||||||| ||| Sbjct 446 AAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGCAA 481 > AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22987938 REVERSE LENGTH=363 Length=363 Score = 108 bits (58), Expect = 9e-23 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 79 TCACCGCAAGGCAGGCCGAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAA 138 |||||| ||||||| |||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 63 TCACCGTGAGGCAGGTCGAAGATGTGTCCAAGGAGACCAAATTAGGAACCTCTCTTCCAA 122 Query 139 AAACTACTACCAAAGG 154 |||||||||||||||| Sbjct 123 AAACTACTACCAAAGG 138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34209454107 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5