BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924815
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61940.1 | Symbols: AtTLP4, TLP4 | tubby like protein 4 | ch... 172 3e-42
> AT1G61940.1 | Symbols: AtTLP4, TLP4 | tubby like protein 4 |
chr1:22897399-22898575 REVERSE LENGTH=735
Length=735
Score = 172 bits (93), Expect = 3e-42
Identities = 141/162 (87%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 146 GAACTGGCGACAAAT-TGTCAAGGAGATCGTTAAATTTCCTGAGGTTTTTAGCAAATTGA 204
||||||||||||||| | |||| ||||||||||| |||||||||||| ||||||||| |
Sbjct 102 GAACTGGCGACAAATAT-TCAAAGAGATCGTTAACGTTCCTGAGGTTTCTAGCAAATTCA 160
Query 205 CTTTTCCTATCTCCCTGAAACAGCCGGGTCCAAGGGGATCACTTGTTCAATGCTATGTTA 264
||||||| |||||| ||||||| || | |||||||||||||||||||||||||
Sbjct 161 CTTTTCCAATCTCCTTGAAACA----GG----A--GGATCACTTGTTCAATGCTATGTTA 210
Query 265 AGAGAAACCGTAGCAGTCAAACTTTCTATCTATTCCTTGGAG 306
||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 211 AGAGAAACCGTAGCAATCAAACTTTCTATCTATACCTTGGAG 252
Score = 106 bits (57), Expect = 3e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 87 ATGCCTCATGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 146
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTCCTGAGCTTCTGAGAGATGTTCTGATGAGGATAGAGCGATCCGAAGACACTTGG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5