BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924827

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61830.1 | Symbols:  | pseudogene, CHP-rich zinc finger prot...   510    4e-144
  AT2G40050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   137    8e-32 
  AT1G61840.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   119    3e-26 
  AT2G02680.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...  54.7    9e-07 


> AT1G61830.1 | Symbols:  | pseudogene, CHP-rich zinc finger protein, 
putative, similar to putative CHP-rich zinc finger protein 
GI:9293934 from (Arabidopsis thaliana) | chr1:22839992-22841860 
FORWARD LENGTH=1869
Length=1869

 Score =  510 bits (276),  Expect = 4e-144
 Identities = 395/449 (88%), Gaps = 21/449 (5%)
 Strand=Plus/Plus

Query  22   ATGGATAATGATTGTGGAATATTTCATATGATGGAGAAAGATGGTAAATTATCCTTGGTA  81
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATAATGACCGTGGAATATTTCATATGATGGAGAAAGATGGTAAATTATCCTTGGTA  60

Query  82   TATCGCCATCCCATACCACAAACTCGAAGTCCAACCTC-TGCCGGT-GAAACAGCCAGTA  139
            ||||||| |||||||  ||||||||||||||||||||| | ||||| |||  ||  ||||
Sbjct  61   TATCGCCCTCCCATAATACAAACTCGAAGTCCAACCTCCT-CCGGTAGAAT-AGTAAGTA  118

Query  140  GCGATGATACCCTTCTTCAACCTTTTTT-CTTATGTCCTAGAACACAATGGAAAAA-AGA  197
            ||||| || ||||||||||||||||||| |||||| |||| |  || ||||||||| |||
Sbjct  119  GCGATAATTCCCTTCTTCAACCTTTTTTTCTTATGCCCTATAGTACGATGGAAAAATAGA  178

Query  198  --CTTTCCACT-TACCATAA-ACCTTTT-TTCAATTCCCAATGTCCCATTCCGTTCTATG  252
              ||||||  | |||||||| |  |||| ||||||| |||||||||||||| ||||||| 
Sbjct  179  GACTTTCCG-TATACCATAAGA--TTTTCTTCAATTACCAATGTCCCATTCGGTTCTATC  235

Query  253  ATAAGTTACATC-GtttttttATATGACGC-TGATGATCATTCAGTACTCCCTTTGTTTT  310
            |||| |||| || |  ||   ||||| | | |||||||||||  ||||||||||||||||
Sbjct  236  ATAAATTACGTCAGAATTAA-ATATG-CTCATGATGATCATTTTGTACTCCCTTTGTTTT  293

Query  311  GGTGCAACAATAAAGAATTTGATGTCAATGGTGGATGTAGTGCATGCGATGGCTCATATT  370
            |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  294  GGTGCAACGATAAAGAATTTGATGTCAATGGTGGATGCAGTGCATGCAATGGCTCATATT  353

Query  371  TTGGTACTGATTATTATTTCTGTGATTACTGTAATCAAATGTATCACAAAGAATGTGTCG  430
            |||| |||||||||||||||||| |  |||||||| ||||||||||||||||||||||||
Sbjct  354  TTGGCACTGATTATTATTTCTGT-A--ACTGTAATAAAATGTATCACAAAGAATGTGTCG  410

Query  431  AGTCTCCACTTAAAATAAAACACCCTTAC  459
            |||||||||||||||||||||||||||||
Sbjct  411  AGTCTCCACTTAAAATAAAACACCCTTAC  439


> AT2G40050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:16723881-16725774 REVERSE LENGTH=1894
Length=1894

 Score =  137 bits (74),  Expect = 8e-32
 Identities = 149/183 (81%), Gaps = 14/183 (8%)
 Strand=Plus/Plus

Query  284  ATGATCATTCA-GTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATG-TCAATGG  341
            ||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct  262  ATGATCA-TCATGTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATGCTGA-TGG  319

Query  342  TGGATG-TAG-TGCATGCGATGGCTCATATTTTGGTACTGATTATTATTTCTGTGATTAC  399
            |||||| ||  |  |||||| |||||| |||  || || || |||||||||||  | || 
Sbjct  320  TGGATGCTACAT--ATGCGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTAT  377

Query  400  TGTA--ATCAAATGTATCACAAAGAATGTGT-CGAGTCTCCACTTAAAATAAAACACCCT  456
            ||||  || |||| || |||||||||||  | | | |||||||||| ||| ||||| |||
Sbjct  378  TGTAGCATAAAAT-TA-CACAAAGAATGCATTCAA-TCTCCACTTATAATCAAACATCCT  434

Query  457  TAC  459
            |||
Sbjct  435  TAC  437


> AT1G61840.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr1:22847389-22849833 FORWARD LENGTH=2445
Length=2445

 Score =  119 bits (64),  Expect = 3e-26
 Identities = 145/183 (79%), Gaps = 10/183 (5%)
 Strand=Plus/Plus

Query  282  TGATGATCATTCAGTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATGTCAATGG  341
            ||| ||||||||| |||||||||||||||||||||||||||||||| | |||||  ||||
Sbjct  267  TGAAGATCATTCACTACTCCCTTTGTTTTGGTGCAACAATAAAGAAATCGATGTGGATGG  326

Query  342  TGGATGT-AGTGCATGC-GATGGCTCATATTTTGGTACTGATTATTATTTCTGTGATT-A  398
            ||| ||  | |  |||| |  |||||| ||||||| || || |||||||| |||| |  |
Sbjct  327  TGGGTGCGA-TATATGCAGC-GGCTCAAATTTTGGCACAGACTATTATTTATGTG-TCCA  383

Query  399  CTGTAATCAA-ATGTATCACAAAGAATGTGTCGAGTCTCCACTT-AAAATAAAACACCCT  456
            |||| || |  || || ||||||||||| ||| | |||||| || |||||  | ||||| 
Sbjct  384  CTGTGAT-AGTATATACCACAAAGAATGCGTCCAATCTCCA-TTCAAAATTGAGCACCCA  441

Query  457  TAC  459
            |||
Sbjct  442  TAC  444


> AT2G02680.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:745775-748573 FORWARD LENGTH=1950
Length=1950

 Score = 54.7 bits (29),  Expect = 9e-07
 Identities = 31/32 (97%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  411  GTATCACAAAGAATGTGTCGAGTCTCCACTTA  442
            ||| ||||||||||||||||||||||||||||
Sbjct  477  GTACCACAAAGAATGTGTCGAGTCTCCACTTA  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5