BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924834

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61795.1 | Symbols:  | PAK-box/P21-Rho-binding family protei...   689    0.0  


> AT1G61795.1 | Symbols:  | PAK-box/P21-Rho-binding family protein 
| chr1:22819632-22821029 FORWARD LENGTH=901
Length=901

 Score =  689 bits (373),  Expect = 0.0
 Identities = 399/412 (97%), Gaps = 0/412 (0%)
 Strand=Plus/Plus

Query  15   TTGAGCATGGCTACAAGATTCAAAGGGATTTATAACAAGAGCTTCAAATGTTTCTCCGAC  74
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  306  TTGAGCATGGCTACAAGATTCAAGGGGCTTTATAACAAGAGCTTCAAATGTTTCTCCGAC  365

Query  75   ATTTTTGATGTGGAGGAGGAGGAAGAGATGGAAATCGGTTATCCGACTGATGTTCGACAC  134
            ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct  366  ATTTTTGATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGACAC  425

Query  135  GTGTCACATATCGGTTGGGATAGTTCATCGAGTAGTGCACCTAGTTGGCTACATGAATTC  194
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  426  GTGTCACATATCGGTTGGGATAGTTCATCAAGTAGTGCACCTAGTTGGCTACATGAATTC  485

Query  195  AAGACGAGCAACAATGTTTTAGAGCCAAACTCATCGTGGCCATTTCAAGATTTGAAATCA  254
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  486  AAGACGAGCAACAATGTTTTAGAGCCAAACTCATCGTGGCCATTTCAAGATTTGAAGTCA  545

Query  255  GCGATGGAGGCATTTGGAGAAGTTGAAAGCAGCAAAGAAATGGAAAGAGAATCAACAAAA  314
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  546  GCGATGGAGGCATTTGGAGAAGTTGAAAGCAGCAAAGAAATGGAAAGAGAATCAACTAAA  605

Query  315  CAAAACCTGAAGAAGAAACTCTCTTTAAAAGCTTCTCTATTGTGTAATACATGGTCACCA  374
            ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct  606  CAAAATCTGAAGAAGAAACTCTCTTCAAAAGCTTCTCTATTGTGTAATTCATGGTCACCA  665

Query  375  AGATTCTCAAGATCAAGCAAGGTCCTTGCTTAATTATTTTTTATTTTAATTT  426
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  666  AGATTCTCAAGATCAAGCAAGGTCCTGGCTTAATTATTTTTCATTTTAATTT  717



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20308170596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5