BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924835
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61790.1 | Symbols: | Oligosaccharyltransferase complex/mag... 1757 0.0
AT1G11560.1 | Symbols: | Oligosaccharyltransferase complex/mag... 436 2e-121
> AT1G61790.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr1:22814390-22815430
FORWARD LENGTH=1041
Length=1041
Score = 1757 bits (951), Expect = 0.0
Identities = 1013/1043 (97%), Gaps = 4/1043 (0%)
Strand=Plus/Plus
Query 24 ATGGCGGTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCGTAGCAACACTATCATCCGCA 83
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1 ATGGCGCTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCATAGCAACACTATCATCCACA 60
Query 84 TTCGCAGCTTCGTTTTCCGATTCAGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 143
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGCAGCTTCGTTTTCCGATTCGGATTCCGATTCAGATCTTCTCAACGAACTTGTATCT 120
Query 144 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTC 180
Query 204 CTAACCTCCGCTTCCACTCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCAACTCAG 263
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTAACCTCCGCTTCCACGCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCTACTCAA 240
Query 264 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCC 300
Query 324 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGCGAGATC 383
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGTGAGATC 360
Query 384 GAGTTTTC-ACAGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 442
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGTTTTCGA-AGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACAT 419
Query 443 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATC 479
Query 503 GGATTACTCTAGATTAGCGGAATCAATGGCTGAGTTCGTCGAGCAACGAACTAAACTCAA 562
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 480 GGATTACTCTAGATTAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAA 539
Query 563 GGTCGGTCCTATTCAACGTCCACCGCTTCTTTCGAAACCGCAGATCGGCGTTATCGTTGC 622
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 540 GGTCGGTCCTATTCAACGTCCACCGCTACTTTCGAAACCACAGATCGGTATTATCGTTGC 599
Query 623 GTTGATCGTTATCGCTACTCCGTTTATTATCAAACGAGTTCTAAAAGGAGAAACTATTCT 682
||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||
Sbjct 600 GTTGATCGTTATCGCTACTCCGTTTATCATCAAAAGAGTTTTGAAAGGAGAAACTATTCT 659
Query 683 TCATGATAGTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGCGTTGCTGG 742
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TCATGATACTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGTGTTGCTGG 719
Query 743 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAA 779
Query 803 TAAGCTTGTGTTCTTT-TACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 861
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGCTTGTGTT-TTTCTACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTG 838
Query 862 TTGGATTCTTGTATACCGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 921
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTC 898
Query 922 GAGTGAAGAATCTTACTGCACAAAGATTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 981
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 GAGTGAAGAATATTACTGCACAAAGGTTGATTATGCTTTTGGCTTTGTTCATATCGTTCT 958
Query 982 GGGCTGTGAAGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATACGGAATTCATCCGT 1041
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 959 GGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCCGT 1018
Query 1042 ATTGGCCATCGAGTTGGCGTTGA 1064
|||||||||||||||||||||||
Sbjct 1019 ATTGGCCATCGAGTTGGCGTTGA 1041
> AT1G11560.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr1:3881788-3882819 FORWARD
LENGTH=1032
Length=1032
Score = 436 bits (236), Expect = 2e-121
Identities = 748/985 (76%), Gaps = 76/985 (8%)
Strand=Plus/Plus
Query 114 GATTCAGATCTTC-TCAACGAACTTGTATCTCTCAGATCAACAAG-CGAATCAGGCGTAA 171
|||||||||| || |||||||| || || ||| ||||||| | |||||||||||| |
Sbjct 79 GATTCAGATC-TCAAAAACGAACTAGTCTCCCTCCGATCAAC-CGCCGAATCAGGCGTGA 136
Query 172 TC-CATCTCGATGACCATGGA-ATCTCAAAATTCCTAACCTCCGCT-TCCACTCCTCGTC 228
|| | | || | || | || | || |||||| ||||||||| | ||||||||| | |
Sbjct 137 TCTCCT-TCAACAACGA-CGACGTTTCCAAATTCATAACCTCCG-TATCCACTCCTAGAC 193
Query 229 CTTACTC-GTTACTCGTCTTCTTCGACGCAACTCAGCTCCACAGCAAAAACGAGCTTCGT 287
||||||| | | || ||||||||||||| ||| |||||| |||| | | |||| |||
Sbjct 194 CTTACTCACTCA-TCATCTTCTTCGACGCCGTTCATCTCCACGGCAATAGCCAGCTACGT 252
Query 288 CTTCAAGAGCTCCGTCGCGAATTC-GGCATCGTCTCCGCTTCATTCCTC-GC--TAACAA 343
|||| |||| |||| ||||||||| | | |||||||||| | ||| || | |||||
Sbjct 253 CTTCCAGAGTTCCGCCGCGAATTCAGAC-TCGTCTCCGCCACTTTCATCACCAACAACAA 311
Query 344 CAATGGATCTGAA-GGAACTAAGCTTTTCTTCTGCGAGATCGAGTTTTCACAGTCTC-AA 401
||||| |||| || || || ||||| ||||||||||||||||| | | || || | |
Sbjct 312 CAATGAATCT-AACGGCACAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTC-CGAG 369
Query 402 TCTTCGTTCCAG-CTCTTTGGCGTTAACG-CTTTACCTCACA-TTCGTCTTGTAAGTCCT 458
|||| |||| | | ||| | ||| | | | |||| |||| ||| || || || ||
Sbjct 370 GCTTCTTTCC-GCCGCTTCGCCGTCGA-GTCACTACCACACATTTC-CCTCGTTAGCCCC 426
Query 459 TCGATATCGAATCT-ACGTGATGAATCTGGTCAAATGGATCAATCG-GATTACTCTAGAT 516
||| | |||| | || | ||||| | ||||||||| | | | |||| | || |||
Sbjct 427 ACGACAGAGAATTTAAC---A-GAATCAGATCAAATGGA-CGGTGGAGATTTCACTGGAT 481
Query 517 TAGCGGAATCAATGGCTGAGTTCGTCGAGCAACGAACTAAACTCAAGGTCGGTCCTATTC 576
|||| ||||||||||| ||||||||||| | | ||| ||||||| || || | || |
Sbjct 482 TAGCCGAATCAATGGCAGAGTTCGTCGAACGTCAAACAAAACTCACCGTTTGTTCAATCC 541
Query 577 AACGTCCACCGCTTC-TTTCGAAA-CCGCAGATCGGCGTTATCGTTGCGT-TGATCGTTA 633
|||| ||||| | || | || ||| | || ||||| | |||||||| | | ||| | |
Sbjct 542 AACGACCACCAC-TCATATC-AAAGACACAAATCGGAATCATCGTTGC-TATAATCATAA 598
Query 634 TCGCTACTCCGTTTATTATCAA-ACGAGTTCTAAAAGGAGAAACTA-TTCTTCATGA-TA 690
|| | |||||| || | ||||| | || |||||||||||||||| | |||| ||||| |
Sbjct 599 TCTCGACTCCGATTCTCATCAAGAAGA-TTCTAAAAGGAGAAAC-ACTTCTCCATGACCA 656
Query 691 GTAGACTTTGGTTA-TCTGGTGCTATCTTCATTTACTTCTTTAGCGT-TGCTGGTACAAT 748
|||| | |||||| | ||| || | ||| | |||||||| ||||| | | || |||||
Sbjct 657 -TAGAATCTGGTTAGT-TGGCGCGGTTTTCGTCTACTTCTTCAGCGTCT-CGGGGACAAT 713
Query 749 GCACAACATTATCAGGA-AAATGCCGATGTTTCTTC-AAGATCGT-AACGATCCGAA-TA 804
||| ||||| || | || ||||||| |||| | || ||||| | || ||| | || ||
Sbjct 714 GCATAACATCATTA-GAGAAATGCCAATGTAT-ATCAAAGATTATGAA-GATTC-AAGTA 769
Query 805 AGCTTGTGTTCTTT-TACCAAGGATCTGGA-ATGCAGCTTGGAGCTGAAGGATTTGC--T 860
|| |||| |||||| || ||| ||| || |||||||||||||| ||||| ||| | |
Sbjct 770 AGTTTGTTTTCTTTATA-GAAGAATC-AGAGATGCAGCTTGGAGCAGAAGG-TTT-CTTT 825
Query 861 GTTGGATTCTTGTATACCGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGT-GCTTGT 919
|| || || |||||||| ||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 826 GTAGGGTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTAG-TTGT 884
Query 920 TCGAGTGAAGAATCT-TACTGCA-CAAA-GATTGATTATGCTTTTGGCTTTGTTC-ATAT 975
||||| ||||| || | || | |||| || || ||||||||||||| || || ||||
Sbjct 885 ACGAGTCAAGAAACTCGA-TG-AGCAAAGGA-TGGCTATGCTTTTGGCTCTG-TCTATAT 940
Query 976 CGTTCTGGGCTGTGAAGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATACGGAATTC 1035
|||| |||||||||| ||||||||||||||||||||||||||||||||| || | ||||
Sbjct 941 CGTTTTGGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGTTATGAAATTT 1000
Query 1036 ATCCGTATTGGCCATCGAGTTGGCG 1060
| || ||||||||||||||||||||
Sbjct 1001 ACCCATATTGGCCATCGAGTTGGCG 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5