BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924839 Length=720 Score E Sequences producing significant alignments: (Bits) Value AT1G61760.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1053 0.0 > AT1G61760.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:22807440-22808114 REVERSE LENGTH=675 Length=675 Score = 1053 bits (570), Expect = 0.0 Identities = 640/675 (95%), Gaps = 0/675 (0%) Strand=Plus/Plus Query 26 ATGCACAACAAGGTCGATTCGTTACCGGTTCGATCGAACCCATCAACCCGGCCTATATCC 85 |||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct 1 ATGCACAACAAGGTCGATTCTTTACCGGTTCGATCGAACCCATCAACGCGACCCATATCC 60 Query 86 CGTCACCACTCGGGGAGCAACATCGTTCATCGGGTCAAAGAAAGCCTCACAACAAGAGTC 145 ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 CGTCACCACTCGGCGAGTAACATCGTTCATCGGGTTAAAGAAAGCCTCACAACAAGAGTC 120 Query 146 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTCTCACTTTC 205 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTATCACTTTC 180 Query 206 ATCTTATGGATCAGTCTACGACCACACCGACCACGCGTCCATATCCGCGGGTTCTCTATC 265 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 181 ATCTTATGGATCAGTCTACAACCACACCGACCACGCGTCCATATCCGCGGGTTCTCAATC 240 Query 266 TCGGGTCTATCCAGGCCTGACGGGTTCGAGACATCACATATAAGCTTCAAGATAACGGCT 325 || |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 241 TCTGGTCTATCCAGGCCCGACGGGTTCGAGACGTCACACATAAGCTTCAAGATAACGGCT 300 Query 326 CATAACCCAAACCAAAACGTTGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 385 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 CATAACCCGAACCAAAACGTCGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 360 Query 386 AAAGAGAAACGGATCGGGTCGACTAAACTCACTAATCCGTTTTACCAAGACCCAAAGAAC 445 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 AAAGAGAAACGGATCGGTTCGACTAAACTTACTAATCCGTTTTACCAAGACCCAAAGAAC 420 Query 446 ACGAGCTGGGTCGACGGAGCCTTAGGTCGACCCGCAATGGCAGTGACTAAGGAACGCTGG 505 ||||||| | |||||||||||||| |||||||||||||||| |||| |||||| || ||| Sbjct 421 ACGAGCTCGATCGACGGAGCCTTAAGTCGACCCGCAATGGCCGTGAATAAGGACCGTTGG 480 Query 506 ATGGAGATGGAACGAGACAGGAATCAAGGGAAGATAGTGTTCCGTTTGGAGGTAAGGTCC 565 ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct 481 ATGGAGATGGAACGAGACAGGAACCAAGGGAAGATAATGTTCCGTTTGAAGGTAAGGTCC 540 Query 566 GTGATACGTTTTAAGGTGTACACATGGCACAGTAAGAGCCATAAGATGTACGCAAACTGT 625 |||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||| Sbjct 541 ATGATACGTTTTAAGGTGTACACATGGCATAGTAAGAGTCACAAGATGTACGCAAGCTGT 600 Query 626 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGGGACTAAAGACAAGAAATGTCCA 685 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 601 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGCGACTAAAGACAAGAGATGTCCA 660 Query 686 GTTTATTTCACTTGA 700 ||||||||||||||| Sbjct 661 GTTTATTTCACTTGA 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34912732165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5