BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924839
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61760.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1053 0.0
> AT1G61760.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:22807440-22808114
REVERSE LENGTH=675
Length=675
Score = 1053 bits (570), Expect = 0.0
Identities = 640/675 (95%), Gaps = 0/675 (0%)
Strand=Plus/Plus
Query 26 ATGCACAACAAGGTCGATTCGTTACCGGTTCGATCGAACCCATCAACCCGGCCTATATCC 85
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 1 ATGCACAACAAGGTCGATTCTTTACCGGTTCGATCGAACCCATCAACGCGACCCATATCC 60
Query 86 CGTCACCACTCGGGGAGCAACATCGTTCATCGGGTCAAAGAAAGCCTCACAACAAGAGTC 145
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGTCACCACTCGGCGAGTAACATCGTTCATCGGGTTAAAGAAAGCCTCACAACAAGAGTC 120
Query 146 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTCTCACTTTC 205
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TCTAAACTCATATGTGCCATTTTCTTATCTCTTTTACTATGTTTAGGCATTATCACTTTC 180
Query 206 ATCTTATGGATCAGTCTACGACCACACCGACCACGCGTCCATATCCGCGGGTTCTCTATC 265
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATCTTATGGATCAGTCTACAACCACACCGACCACGCGTCCATATCCGCGGGTTCTCAATC 240
Query 266 TCGGGTCTATCCAGGCCTGACGGGTTCGAGACATCACATATAAGCTTCAAGATAACGGCT 325
|| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 TCTGGTCTATCCAGGCCCGACGGGTTCGAGACGTCACACATAAGCTTCAAGATAACGGCT 300
Query 326 CATAACCCAAACCAAAACGTTGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 385
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATAACCCGAACCAAAACGTCGGCATTTACTACGATTCCATGGAAGGATCCGTTTACTAC 360
Query 386 AAAGAGAAACGGATCGGGTCGACTAAACTCACTAATCCGTTTTACCAAGACCCAAAGAAC 445
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AAAGAGAAACGGATCGGTTCGACTAAACTTACTAATCCGTTTTACCAAGACCCAAAGAAC 420
Query 446 ACGAGCTGGGTCGACGGAGCCTTAGGTCGACCCGCAATGGCAGTGACTAAGGAACGCTGG 505
||||||| | |||||||||||||| |||||||||||||||| |||| |||||| || |||
Sbjct 421 ACGAGCTCGATCGACGGAGCCTTAAGTCGACCCGCAATGGCCGTGAATAAGGACCGTTGG 480
Query 506 ATGGAGATGGAACGAGACAGGAATCAAGGGAAGATAGTGTTCCGTTTGGAGGTAAGGTCC 565
||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 481 ATGGAGATGGAACGAGACAGGAACCAAGGGAAGATAATGTTCCGTTTGAAGGTAAGGTCC 540
Query 566 GTGATACGTTTTAAGGTGTACACATGGCACAGTAAGAGCCATAAGATGTACGCAAACTGT 625
|||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||||
Sbjct 541 ATGATACGTTTTAAGGTGTACACATGGCATAGTAAGAGTCACAAGATGTACGCAAGCTGT 600
Query 626 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGGGACTAAAGACAAGAAATGTCCA 685
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 601 TATATTGAGATCGGTTGGGATGGAATGTTGTTGAGTGCGACTAAAGACAAGAGATGTCCA 660
Query 686 GTTTATTTCACTTGA 700
|||||||||||||||
Sbjct 661 GTTTATTTCACTTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5