BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924840
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61750.1 | Symbols: | Receptor-like protein kinase-related ... 715 0.0
> AT1G61750.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr1:22804613-22806318 REVERSE LENGTH=1026
Length=1026
Score = 715 bits (387), Expect = 0.0
Identities = 490/540 (91%), Gaps = 6/540 (1%)
Strand=Plus/Plus
Query 53 CTATTGCTACACATCAGGAAACTACACGGCAAACAGTTCGTACAAATACAATCTAGATTC 112
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
Sbjct 96 CTATTGCTACACATCAGGAAACTACACACCGAACAGTTCGTACAAATCCAATCTAGATAC 155
Query 113 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGTTTTTACAGCTACGCCTCCAG 172
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 156 TTTAATATCCGTTCTTGATTCTCAATCATCCAACAAAGGCTTTTATAGCTACGCCTCGGG 215
Query 173 TTCTTCCTCAAGCACAACAGTTTATGGAACTTATCTATGTCGAGGAGACATTTCGTCTTC 232
||||||| ||| ||||||||| || |||| |||||||||||| ||||| || ||||| ||
Sbjct 216 TTCTTCCCCAACCACAACAGTGTACGGAAGTTATCTATGTCGCGGAGATATCTCGTCCTC 275
Query 233 AAAATGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTAAATGGTGTGCTGTCCA 292
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 276 AACTTGTGAAACATGCATCTCAAGAGCATCCAAAAACGTTTTTATATGGTGTCCGGTCCA 335
Query 293 AAACGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAACCATCAGATTTT 352
||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 336 AAAAGAAGCTATCATATGGTATGAAGAATGCTTCCTCAGGTACTCCAGCCGTAAGATTTT 395
Query 353 CTCGATTCTTGATCAAGGGCCATTTGTTACATGGACGA-CTTATGATACCATGTTGTACC 411
|||||||||||||||||| ||||||||||||||||| | |||| ||||||| ||||||||
Sbjct 396 CTCGATTCTTGATCAAGGTCCATTTGTTACATGGAC-ATCTTACGATACCACGTTGTACC 454
Query 412 AATCTTATTTCATTAATACCGTGGAATATAGTATAGACCGGCTGATACAAGAAGCCTATT 471
| | |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||
Sbjct 455 AGTTTTATTTCATTAACACCGTGGAATATCGTATGGACCGGTTGATACAAGAAGCCTATT 514
Query 472 CGCGTTCTTCATATTTTGCAGAAGAAACTTATCATGTGAGTTGTCTTGGAGAAGTTTACG 531
|| | |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 515 CGAGCTCTTCATATTTTGCGGAAGAAACTTATCATGTCAGTTATCTTGGAGAAGTTTACG 574
Query 532 ACCTAA-TAGGATTGGTATACTGTGCACACCCGATCTAAATCAGTATGATTGCTATAGGT 590
| |||| | ||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 575 ATCTAAAT-GGATTGGTACA--GTGCACACCCGATCTGAATCAGTATGATTGCTATAGGT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5