BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924851

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein |...   128    3e-29


> AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:22780733-22781388 REVERSE LENGTH=413
Length=413

 Score =  128 bits (69),  Expect = 3e-29
 Identities = 110/130 (85%), Gaps = 1/130 (1%)
 Strand=Plus/Plus

Query  4    aaaaaatta-tatataaaaaatggttatcaccacaaaaaaTCTAATCACATTTGTTTTCG  62
            ||||||| |  ||||||||||||| || |||| ||||||  |||||| ||||||||||| 
Sbjct  16   AAAAAATAAGAATATAAAAAATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCA  75

Query  63   GTGTCATTTTCATCATATCTTATGTTCATTGTCATACAACAACTGCTAGTGCTCCAGGCG  122
            | || ||| ||||||||||||||||||||||||||||||||| ||| ||||| ||| || 
Sbjct  76   GCGTTATTGTCATCATATCTTATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCA  135

Query  123  GGGGTGGACC  132
            | |||| |||
Sbjct  136  GTGGTGAACC  145



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5