BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924854
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61680.1 | Symbols: TPS14, ATTPS14 | terpene synthase 14 | c... 992 0.0
> AT1G61680.1 | Symbols: TPS14, ATTPS14 | terpene synthase 14 |
chr1:22772455-22774687 REVERSE LENGTH=1710
Length=1710
Score = 992 bits (537), Expect = 0.0
Identities = 868/1027 (85%), Gaps = 25/1027 (2%)
Strand=Plus/Plus
Query 22 ATGGCCTTGATAGCTCCCACAATAACTTCAC-TTCCTTGTTCTGTTTCAAAACATTCAAA 80
|||||||| |||||| ||| ||||| ||||| || |||||| |||||| || ||||
Sbjct 1 ATGGCCTTAATAGCTACCAAAATAAGTTCACGTT-CTTGTTTTGTTTCTGCTTATCCAAA 59
Query 81 CAATCCTCCAACGTTTCTGATCTCGAAATTTCACAATGCGGTCGCTTCTTCATCGTCTGC 140
|||| |||||||||||||||| || ||||||| |||| |||||| ||||| ||| ||||
Sbjct 60 CAATTCTCCAACGTTTCTGATATCCAAATTTCCCAATACGGTCGATTCTTTGTCGCCTGC 119
Query 141 AAAAACTGCTAACAGAAT-GCTCTCAAGCTGTGTCTACT-CTCCGGTTTCTAGCATTTTG 198
||| |||||||| || || | ||| || ||| | | || | ||||||| | || |
Sbjct 120 AAATACTGCTAAAAG-ATCGATCTTGAGAAACGTCCA-TGCTTCAGTTTCTAACCCTTCG 177
Query 199 AAGAAGTTTGATCACAAGACATCCATAGAATATTCACACAAATTGAATATCAAGAAGGTC 258
||| ||||| || | ||||||||| ||||||||| |||| | ||||||||||||||| ||
Sbjct 178 AAGCAGTTTCATAATAAGACATCCTTAGAATATTTACACGAGTTGAATATCAAGAAGATC 237
Query 259 AAGAACATTCT-AGTTTCAAACCG-AGATGATCCATTTGAGAACTTGGAGATGATCAATG 316
||||| || || || | |||| || ||||| ||||| |||||| ||||||||||| |||
Sbjct 238 AAGAATATACTAAG-TGCAAA-CGTAGATGTTCCATCCGAGAACCTGGAGATGATCGATG 295
Query 317 CCATTCAAGGTTTAGGCATTGATCTCTATTTCCGACACGAGATCGATCAAACTCTTCACA 376
||||||| ||||||||||||||||| |||| ||||| |||||||| ||||| |||||||
Sbjct 296 TCATTCAAAGTTTAGGCATTGATCTCCATTTTCGACAAGAGATCGAGCAAACCCTTCACA 355
Query 377 TGATATACAAAGAA-CCCACCCATTTCTATGGAC-GTGATCTTCGTGAGGTCGCGCTTTG 434
|||| ||||||||| || ||| ||| | || ||||||| | |||| | |||||| |
Sbjct 356 TGATTTACAAAGAAGGCC-TCCAATTC-A---ACGGTGATCTCCATGAGATAGCGCTTCG 410
Query 435 CTTTCGATTGCTGAGACAAGAAGGTTACTATGTTCAAGAAAGTATTTTTGAAAACATCCT 494
||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||||
Sbjct 411 CTTTCGATTGCTGAGACAAGAGGGTCACTATGTTCAAGAAATTATTTTCAAAAACATCCT 470
Query 495 TGACAAGAAAGGTGGATTGGAAGACG-ACCCAAAAAATGACGTGAAGGTTCTAATAGAAT 553
|||||||| |||||||| |||||| | |||||||||||| |||| ||||| |||||
Sbjct 471 AGACAAGAAGGGTGGATTTAAAGACGTA-GTAAAAAATGACGTCAAGGGTCTAACAGAAT 529
Query 554 TGTATGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTTGATGGAGTGAGAGACT 613
||| ||||||||||||||||||||||||||||||||||||||| || || | |||||| |
Sbjct 530 TGTTTGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTCGACGGTGCGAGAGAAT 589
Query 614 TTACATTTAACTGCCTTAATGAACTTTGCTCAGGTCGAAAAAGTCATCAAGAGCGAGAGA 673
| |||| || | ||||||||||||||||||||||| || ||||||||||| ||| |||||
Sbjct 590 TCACATATAGCCGCCTTAATGAACTTTGCTCAGGTAGAGAAAGTCATCAAAAGCAAGAGA 649
Query 674 TAATG-AGTTCTTTGGCGCAACCTCGCCACAAAACCTTAAGAAGATTAACGT-CAATAAG 731
||||| || ||||||||||||||||||||||||||| ||||| ||||||||| ||| ||
Sbjct 650 TAATGAAG-TCTTTGGCGCAACCTCGCCACAAAACCGTAAGAGGATTAACGTCCAA-GAG 707
Query 732 GTTCATGAGCATGATCAAAATTGCTGGTCAAGAAGATAAAGAGTGGTTACAATCTCTTTT 791
||||| |||||||||||||| || |||||||||||| ||| |||||||| ||||| ||
Sbjct 708 GTTCACAAGCATGATCAAAATCGCGGGTCAAGAAGATCCAGAATGGTTACAGTCTCTATT 767
Query 792 ACTAGTGGCTGAGATTGATTCCATTAGGTTGAAGTCCCTGATTCAAGAAGAAATGTCTCA 851
|| |||||| ||||| |||||||||||| | ||||| ||| ||||| ||||||||||||
Sbjct 768 ACGAGTGGCGGAGATCGATTCCATTAGGCTAAAGTCATTGACTCAAGGAGAAATGTCTCA 827
Query 852 AATATTCAAATGGTGGAGAGAGCTTAATTTAGAAAAAGA-GCTGGAGAAGGCAAGAAACC 910
|| ||| |||||||||| ||| ||| |||||||||||| | ||||||||||||||| ||
Sbjct 828 AACATTTAAATGGTGGACAGAACTTGGTTTAGAAAAAGATG-TGGAGAAGGCAAGAAGCC 886
Query 911 AGCCACTAAAATGGTACACATGGTCCATGGAAATTCTTCAAGATCCAACCTTAACCGAAC 970
|||| |||||||| | || ||||||||| |||||||||||||||| |||||||||||||
Sbjct 887 AGCCGTTAAAATGGCATACGTGGTCCATGAAAATTCTTCAAGATCCGACCTTAACCGAAC 946
Query 971 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTACGTTATAGATGACATTTTCGATG 1030
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 947 AAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTATGTTATAGATGACATTTTCGATG 1006
Query 1031 TTTATGG 1037
| |||||
Sbjct 1007 TCTATGG 1013
Score = 826 bits (447), Expect = 0.0
Identities = 498/522 (95%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 1228 TGGGCAAGTTTGTGTAAAGCATTCTTGATAGAAGCAAAGTGGTTTCATTCGGGTTACTTA 1287
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1195 TGGGCAAGTTTGTGTAAAGCATTCTTGGTAGAAGCAAAGTGGTTTAATTCGGGTTACTTA 1254
Query 1288 CCGAATACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1347
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CCCACCACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATG 1314
Query 1348 CTCCATGCCTACATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATTGAG 1407
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 CTTCATGCCTATATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATAGAG 1374
Query 1408 AGCAACCCAGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1467
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AGTAACCCGGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGA 1434
Query 1468 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATACGTAGAGTGTTACCTGAAC 1527
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1435 AGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATATGTAGAGTGTTACCTGAAC 1494
Query 1528 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGTCCAGAAGATATCTAAA 1587
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1495 GAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGCCCAGAAGATATCTAGA 1554
Query 1588 GAATGGAAACGCTTGAACAGGGAGTGTCTGAATCCAAGTCCATTCTCAAGATCATTCTCC 1647
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1555 GCATGGAAACGCTTGAACAGGGAGTGTCTGAATCCATGTCCATTCTCAAGATCATTCTCA 1614
Query 1648 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTCTAATGTACAGCTACGATGATGATCAA 1707
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1615 AAAGCTTGTCTCAACATTGCAAGAACAGTTCCTTTAATGTACAGCTATGATGATGATCAA 1674
Query 1708 CGACTTCCCGGTCTCGACGAATATCTCAAGTCTCTAATGTAA 1749
|||||||||| ||||||||||||||||||||||||||
Sbjct 1675 CGACTTCCCG------ACGAATATCTCAAGTCTCTAATGTAA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5