BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924855
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61670.1 | Symbols: | Lung seven transmembrane receptor fam... 2388 0.0
> AT1G61670.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr1:22770029-22772426 FORWARD LENGTH=1813
Length=1813
Score = 2388 bits (1293), Expect = 0.0
Identities = 1480/1569 (94%), Gaps = 18/1569 (1%)
Strand=Plus/Plus
Query 7 GATCGGATATTTCGATGGAGAGCCGCTCTTTAGGGTTTTGGGCGATTGGGGTTTTACTCG 66
||||||||||||||||| ||| || |||||||||||||||||||| |||||||| |||
Sbjct 90 GATCGGATATTTCGATGAAGAATCGTTCTTTAGGGTTTTGGGCGATCGGGGTTTTGCTCA 149
Query 67 TCGGAAGCTTAATCGGAGCTAC-GAATGGCTCGATTCATTCGTATAACAACGAAAAGTTC 125
|||||||||| ||||||||||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 150 TCGGAAGCTTGATCGGAGCTACGGAA-GGCTCGATTCATGAGTACAACAACGAAAAGTTC 208
Query 126 ACTGTC-AAATTCAATGCTCGCTTCTTCCATGGTGGCAGCGAAGGTCTTTACGCTTCCAA 184
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 209 ACTG-CAAAATTCAATGCTCGCTTCTTCCATGGTGGTAGCGAAGGTCTTTACGCTTCCAA 267
Query 185 ATTTCAAGATCTAAA--C-TCTTCTTCTTCTGATAATCCTTTTAAAGGCAAGTCCTTTAT 241
|| |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 268 ATCTCAAGATCTAAACTCTTCTTCTTCTTCTGATAATTCTTTTAAAGGCAAGTCCTTTAT 327
Query 242 CAGGTTTGATGATGTAACTTTTGTGAGGACAAAGGAATCAGCTAGTAAACAGAATGCAAT 301
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 328 AAGGTTTGATGATGTAACATTTGTGAGGACAAAGGAATCTGCTAGTAAACAGAATGCAAT 387
Query 302 GCAGTCAACTGCTGGATTGGTGGAAGCTATAATACTTGAGGTAAAAGATCGTGATAGAAT 361
|||||||||| | ||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 388 GCAGTCAACTTCAGGATTAGTGGAAGCAATTATACTTGAGGTAAAAGACCGTGATAGAAT 447
Query 362 CGGTGGCACTTTTCTCAAATCCGAAGTGATTTGTTGTACGCCTGAGCTTGCTGATACTGG 421
|||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 448 CGGTGGTACTTTTCTCAAATCCGAAGTGATTTGTTGCACGCCGGAGCTAGCTGATACTGG 507
Query 422 ATCTTGTAGTCTTGGGGAAGTTAT-AGTTAATAGAGAGTCTAATGATCTTGAATGGCCAA 480
|||||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||
Sbjct 508 ATCTTGTAGTCTTGGGGAAGTTATCA-TTAAGAGAGAGTCTAATGATGTTGAGTGGCCAA 566
Query 481 GACAGATCAAGACTTTCTTTAAAGGGAATAAGACTGAAGTT-ACTATGTCCCCTGAAACT 539
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 567 GACAGATCAAGACATTCTTTAAAGGGAATAAGACTGAAGTTAAC-ATGTCCCCTGAAACT 625
Query 540 GTGGTTATTAATAAGACTGGGATGTATTATCTTTATTTCATGATATGTGATCCGGAGTTG 599
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 626 GTGGTTATCAATAAGACTGGGATGTATTATCTTTATTTCATGATATGTGACCCGGAATTG 685
Query 600 GATGGTACTAGAATC-AGAGGGAGAACAGTTTGGAAGAACCCTGATGGTTATTTACCTGG 658
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GATGGTACTAGGATCAAG-GGGAGAACAGTTTGGAAGAACCCTGATGGTTATTTACCTGG 744
Query 659 AAAGGTTGCTCCTTTAATGAAAGTTTTTGGGTTTATGTCGTTAGCGTATGTTTTGCTTGG 718
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 745 AAAGGTTGCTCCTTTAATGAACGTTTTTGGCTTTATGTCGTTAGCGTATATTTTGCTTGG 804
Query 719 CCTAGTTTGGTTTGTGCGGTTTGTTCAGTTTTGGAAGGATATAATTCAGCTGCACTATCA 778
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 805 TCTAGTTTGGTTTGTGAGGTTTGTTCAGTTTTGGAAGGATATAATTCAGTTGCATTATCA 864
Query 779 TATTACTTTGGTTATTGCTCTTGGCATGTGTGAAATGGCTGTTCGATACTTTGAATATGT 838
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 865 TATCACTTTGGTTATTGCTCTTGGTATGTGTGAAATGGCTGTTCGATACTTTGAGTATGT 924
Query 839 TAATTTCAACTCGACTGGGATGAGACCAATGGACGTTACTCTATGGGCGGTGACCTTTTC 898
|||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 925 TAATTTTAACTCCACTGGGATGAGGCCAATGGATGTTACCCTATGGGCGGTGACCTTTTC 984
Query 899 GTCTATTAAA-AAGACGCTTTCTAGGCTTCTTCTTCTGGTTGTCTCTATGGGTTATGGGG 957
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 985 TTCTA-TAAAGAAGACGCTTTCTAGGCTTCTTCTTCTGGTAGTCTCTATGGGTTATGGTG 1043
Query 958 TTGTAAAGCCTACCCTTGGTGGTATAACCTCGAGGGTACTTCTTCTTGGAGTCATATATT 1017
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1044 TTGTAAAGCCTACCCTTGGTGGTATAACCTCGAGGATACTTCTACTTGGAGTCATATATT 1103
Query 1018 TTGTTGCAACGGAGGCTCTTGAGTTGGTTGAGCATTTGGGAAACATCAATGACTTTTCGG 1077
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TTGTTGCAACAGAGGCTCTTGAGTTGGTTGAGCATTTGGGAAACATCAATGACTTTTCGG 1163
Query 1078 GAAAGACAATGATAGTTTTGGTGATTCCCGTGGCATTACTGGATGCTTGCTTTATTCTGT 1137
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1164 GAAAGACGATGATAGTTTTGGTTATTCCCGTGGCATTACTGGATGCTTGCTTTATTCTGT 1223
Query 1138 GGATTTTCTCATCATTGGCAAGAACCCTTGAGAAACTTCAGATTAAGAGAAACATGGCTA 1197
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1224 GGATTTTCTCATCATTGGCAAGAACACTTGAGAAACTTCAGATTAAGAGAAACATGGCCA 1283
Query 1198 AGCTTGAGCTTTATAGGAACTTCACCAATGCACTCGCTATCTCTGTTCTGCTCTCTATTG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1284 AGCTTGAGCTTTATAGGAACTTCACCAATGCACTCGCTATCTCTGTTCTGCTCTCTATCG 1343
Query 1258 CTTGGATTGGTTTCGAGCTTTACTTCAACGGAACTGACCCTCTAATCGAACTCTGGCGAA 1317
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CTTGGATTGGTTTTGAGCTATACTTCAACGGAACTGACCCTCTAATCGAACTCTGGCGAA 1403
Query 1318 TGGCGTGGATCATTCCAGCTTTTTGGAATATACTCTCTTATGGTCTGTTAGCAGTCATAT 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1404 TGGCGTGGATCATTCCAGCTTTTTGGAATTTACTCTCTTATGGTCTGTTAGCAGTCATAT 1463
Query 1378 GCATCCTTTGGGCACCATCCAATAATCCCACAAGGTACTCATACTTAGCAGAAACAGGGG 1437
||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1464 GCATCCTTTGGGCTCCATCAAATAATCCTACAAGGTACTCATACTTAGCGGAAACAGGGG 1523
Query 1438 ACGAGTTTGAAGAGGAAGGTATCTCATTGACA---AGTGGAATTAAGAGTACAGAAGATG 1494
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1524 ATGAGTTTGAAGAGGAAGGTATCTCATTGACAGGTAGTGGAATTAAGAGTACAGAAGATG 1583
Query 1495 TTGAAAGGAATGAACTTCTATTTGGGCTTCCAGACGACGTTGAAGAGGGAAAACGCGAGT 1554
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1584 TTGAAAGGAATGAACTTCTATTTGGGCTTCCAGACGACGTTGAAGAGGGCAAACGTGAGT 1643
Query 1555 AAGCTCCAG 1563
|||||||||
Sbjct 1644 AAGCTCCAG 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77810844750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5