BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924869

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61570.1 | Symbols: TIM13 | translocase of the inner mitocho...   350    6e-96


> AT1G61570.1 | Symbols: TIM13 | translocase of the inner mitochondrial 
membrane 13 | chr1:22718705-22719516 REVERSE LENGTH=499
Length=499

 Score =  350 bits (189),  Expect = 6e-96
 Identities = 265/299 (89%), Gaps = 16/299 (5%)
 Strand=Plus/Plus

Query  1    GAC-TTTGAGAGa-a-a-aaaaaaaaTGGATTCATACTCTTCGCCGCCGGTGGGAGG-T-  54
            ||| ||||||||| | | | || |||||||||||||||||||||||||| ||||||| | 
Sbjct  19   GACTTTTGAGAGAGAGAGAGAAGAAATGGATTCATACTCTTCGCCGCCGATGGGAGGTTC  78

Query  55   -GGT-GCTTCGCCTTCGCCCGAAGTACTGATGGAG-CAGGTCAAGACACAACTCGCTCAA  111
             ||| | ||||  ||||||||||||| |||||||| | ||||||||| || |||||||||
Sbjct  79   AGGTAG-TTCGGTTTCGCCCGAAGTAATGATGGAGTC-GGTCAAGACTCAGCTCGCTCAA  136

Query  112  GCTTACGCCGAAGAGTTCATCGAGACTGTGAG-AGTAAAATGTTTTGATAAGTGCATAAC  170
            ||||||||||||||||| ||||||||| |||| |  |||||||||||| |||||| ||||
Sbjct  137  GCTTACGCCGAAGAGTTAATCGAGACTTTGAGGAC-AAAATGTTTTGACAAGTGCGTAAC  195

Query  171  GAAGCCAGGATCAAGCCTCGGTGGGAGTGAGAGTAGCTGTATTTCGAGATGCT-TTGATC  229
            |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
Sbjct  196  GAAGCCAGGATCAAGCCTCGGTGGAAGTGAGAGTAGCTGTATTTCGAGATG-TGTTGAAC  254

Query  230  GTTACATTGAAGCTACTGGAATCATAAGTCGTTCTCTTTTCACCCAACGTTGAATCAAT  288
            ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct  255  GTTACATGGAAGCTACTGCAATCATAAGTCGTTCTCTTTTCACTCAACGTTGA-TCAAT  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13974434222


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5