BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924871

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-227...   305    1e-82
  AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-227...   274    3e-73


> AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-22717610 
REVERSE LENGTH=551
Length=551

 Score =  305 bits (165),  Expect = 1e-82
 Identities = 221/246 (90%), Gaps = 11/246 (4%)
 Strand=Plus/Plus

Query  9    AAGAAGAATAA-AATATGGGGATGTCTAAAAGTATCAAGGTTATTC-TATCTCTTGCTCT  66
            ||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  104  AAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTA-TCTTATCTCTTGCTCT  162

Query  67   CGTCGTGTTTTTGGCCCTTGCAT-CAATCAAGGTTGAGGCCACAAGATACATAACTTATC  125
            ||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct  163  CGTAGTGTTCTTGGCCCTTGC-TGCAACCAAGGTTGAGGCCACAAGATACATAACTTATC  221

Query  126  CTAG-TATAAATCATGGAGATCATGCTACACATTGTGATAAAGCCCACCCTAACACGTGC  184
            || | |||  ||| |||||||||||||  ||||||||| ||||||||||||||||| |||
Sbjct  222  CT-GCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGC  280

Query  185  AAGAAGAAAGAAGCAAATCCTTACAAAAGAGGATGCGA-AATACTCGAA-CGTTGCCGTG  242
            |||||||||||||||||||||||| | ||||||||||| || | || || ||||||||||
Sbjct  281  AAGAAGAAAGAAGCAAATCCTTACCAGAGAGGATGCGAGAAGA-TC-AATCGTTGCCGTG  338

Query  243  GTGGAT  248
            ||||||
Sbjct  339  GTGGAT  344


 Score = 63.9 bits (34),  Expect = 8e-10
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  253  CCCAAGAGCATAAAATATACATCAATACATTATTTAT  289
            ||||||||||||||||||||||||||||||||| |||
Sbjct  374  CCCAAGAGCATAAAATATACATCAATACATTATCTAT  410


> AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-22715448 
REVERSE LENGTH=528
Length=528

 Score =  274 bits (148),  Expect = 3e-73
 Identities = 213/244 (87%), Gaps = 6/244 (2%)
 Strand=Plus/Plus

Query  1    TGTGGAAGAAGAAGAATAA-AATATGGGGATGTCTAAAAGTATCAAGGTTATTCTATCTC  59
            ||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct  97   TGTGGAAAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTC  156

Query  60   TTGCTCTCGTCGTGTTTTTGGCCCTTGCATCAATCAAGGTTGAGGCCAC---AAGATACA  116
            ||||||| || ||||| ||||| ||||||  || ||||||||||||| |   ||||||||
Sbjct  157  TTGCTCTTGTAGTGTTCTTGGCACTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACA  216

Query  117  TAACTTATCCTAG-TATAAATCATGGAGATCATGCTACACATTGTGATAAAGCCCACCCT  175
            ||||||||||| | |||  ||| |||||||||||||  ||||||||| ||||||||||||
Sbjct  217  TAACTTATCCT-GCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCT  275

Query  176  AACACGTGCAAGAAGAAAGAAGCAAATCCTTACAAAAGAGGATGCGAAATACTCGAACGT  235
            ||||| |||||||||||| |||||||||||||||  |||||||||| | | |||||| ||
Sbjct  276  AACACCTGCAAGAAGAAACAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGT  335

Query  236  TGCC  239
            ||||
Sbjct  336  TGCC  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13320953485


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5