BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924873

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-227...   339    1e-92
  AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-227...   291    3e-78
  AT2G22055.1 | Symbols: RALFL15 | RALF-like 15 | chr2:9379578-93...   261    3e-69


> AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-22715448 
REVERSE LENGTH=528
Length=528

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 233/256 (91%), Gaps = 7/256 (3%)
 Strand=Plus/Plus

Query  3    GGAAAAAGAACGATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTG  62
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  GGAAAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTG  159

Query  63   CTCTTGTAGTGTTCTTGGCCCTTGCAACAACCAAGGTTGAGGCCAC---AAGATACATAT  119
            ||||||||||||||||||| ||||||  |||||||||||||||| |   |||||||||| 
Sbjct  160  CTCTTGTAGTGTTCTTGGCACTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACATAA  219

Query  120  CTTATCCTAG-TATTAATAC-TGGAGATCATGCTCCACATTGTGACAAAGCCCACCCTCA  177
            |||||||| | |||  || | |||||||||||||  |||||||||||||||||||||| |
Sbjct  220  CTTATCCT-GCTATCGAT-CGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAA  277

Query  178  CACCTGTTGGAAGAAAGAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTG  237
            ||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  CACCTGCAAGAAGAAACAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTG  337

Query  238  CCATCGTGAAACTGGT  253
            |||||||||||| |||
Sbjct  338  CCATCGTGAAACAGGT  353


> AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-22717610 
REVERSE LENGTH=551
Length=551

 Score =  291 bits (157),  Expect = 3e-78
 Identities = 202/223 (91%), Gaps = 6/223 (3%)
 Strand=Plus/Plus

Query  2    CGGAAAAAGAACGATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTT  61
            |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  98   CGGATAAAGAACAATAATAATATGGGGATGTCTAAAAGTATCAAGGTTATCTTATCTCTT  157

Query  62   GCTCTTGTAGTGTTCTTGGCCCTTGCAACAACCAAGGTTGAGGCCACAAGATACATATCT  121
            ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||
Sbjct  158  GCTCTCGTAGTGTTCTTGGCCCTTGCTGCAACCAAGGTTGAGGCCACAAGATACATAACT  217

Query  122  TATCCTAG-TATTAATAC-TGGAGATCATGCTCCACATTGTGACAAAGCCCACCCTCACA  179
            |||||| | |||  || | |||||||||||||  |||||||||||||||||||||| |||
Sbjct  218  TATCCT-GCTATCGAT-CGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACA  275

Query  180  CCTGTTGGAAGAAAGAAGCAAATCCTTAC-AGGAGAGGATGCG  221
            ||||   |||||||||||||||||||||| || ||||||||||
Sbjct  276  CCTGCAAGAAGAAAGAAGCAAATCCTTACCAG-AGAGGATGCG  317


> AT2G22055.1 | Symbols: RALFL15 | RALF-like 15 | chr2:9379578-9379817 
FORWARD LENGTH=240
Length=240

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 208/241 (86%), Gaps = 2/241 (1%)
 Strand=Plus/Plus

Query  23   ATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTGCTCTTGTAGTGTTCTTGGCC  82
            ||||||||||| |||||||||||||||||  |||||||||||||  || | || ||||||
Sbjct  1    ATGGGGATGTCAAAAAGTATCAAGGTTATTGTATCTCTTGCTCTCATATTATTTTTGGCC  60

Query  83   CTTGCAACAACCAAGGTTGAGGCCACAAGATACATATCTTATCCTAGTATTAATAC-TGG  141
            |||||| ||||||||||||| |||||||||||||||  ||||| | |||| ||| | |||
Sbjct  61   CTTGCAGCAACCAAGGTTGAAGCCACAAGATACATAAGTTATCGTGGTATGAAT-CATGG  119

Query  142  AGATCATGCTCCACATTGTGACAAAGCCCACCCTCACACCTGTTGGAAGAAAGAAGCAAA  201
            ||||||||||  |||||||||||||||||||||| |||||||   |||| ||| ||||||
Sbjct  120  AGATCATGCTATACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGCAAGTAGCAAA  179

Query  202  TCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTGCCATCGTGAAACTGGTAGAAAATG  261
            ||||||||||||||||||||||    ||||| |||||| |||||| || |||||||||||
Sbjct  180  TCCTTACAGGAGAGGATGCGGAACAATCGAACGTTGCCGTCGTGATACAGGTAGAAAATG  239

Query  262  A  262
            |
Sbjct  240  A  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13119882489


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5