BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924889
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 303 4e-82
> AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G27260.1);
Has 260 Blast hits to 212 proteins in 20 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:12742536-12743749
FORWARD LENGTH=1131
Length=1131
Score = 303 bits (164), Expect = 4e-82
Identities = 194/207 (94%), Gaps = 8/207 (4%)
Strand=Plus/Plus
Query 21 ATGGAATCAGGAGACCAGGCAGAGGCAGGAGAGACGTCaaaaaagaaaaagaaaGGCCCA 80
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCAGGAGA-C---C--AGGCAGGAGAGACGTCAAAAAAGAAAAAGAAAGGCCCA 54
Query 81 TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAATGGCTATATTAGTTGATGCTATC 140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 55 TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAACGGCTATATTAGTTGATGCTATC 114
Query 141 AAACGGGGCTGGCGTGaaaaaaaaGGTACCATAAGCAAAACTACGGTAGAGA-AAAAGAT 199
||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 115 AAACGAGGCTGGCGTGACAAAAATGGTACCATAAGCAAAACTACGGTAGAGAGAAAA-AT 173
Query 200 ACTACCTCTTCTAAATAAAAAGCTTAA 226
|||||||||||||||||||||| ||||
Sbjct 174 ACTACCTCTTCTAAATAAAAAGTTTAA 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5