BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924896
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61350.1 | Symbols: | ARM repeat superfamily protein | chr1... 2870 0.0
> AT1G61350.1 | Symbols: | ARM repeat superfamily protein | chr1:22633882-22635894
FORWARD LENGTH=2013
Length=2013
Score = 2870 bits (1554), Expect = 0.0
Identities = 1698/1768 (96%), Gaps = 7/1768 (0%)
Strand=Plus/Plus
Query 1 AGAAGAAGACTTTATCAACCAAAATGGGTGAAGAAACTTGTGAGG-A--ATCAAAAGCAA 57
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 195 AGAAGAAGACTTTATCAACCAAAATGGGTGAAGAAGCTTGTGAGGAATCATCAAAAGCAA 254
Query 58 GCATAGAGAAAGCAATCGAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAAT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GCATAGAGAAAGCAATCGAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAAT 314
Query 118 CCTTCAACATCAAATGGCAACTCATAAGAACCAAACTCGAAGAGCTTTACTCTGGTCTCT 177
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 315 CCTTCAACATCAAATGGCAACTCATAAGAACCAAACTCCAAGAGCTTTACTCTGGTCTCG 374
Query 178 CTGCTCTC-GAGAATCTCAATTCTGGATTCGACCCATCTCTCTCAAGCTTAATCTCCGCC 236
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATTCTCTCCGA-AATCTCAATTCTGGATTCGACCCATCTCTCTCAAGCTTAATCTCCGCC 433
Query 237 ATTCTTATCTCTCTCAAAGACACTTACGATCTCGCTACTCGTTGCGTTAACGTTTCCTTC 296
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 434 ATTCTAATCTCTCTCAAAGACACTTACGATCTCGCTACTCGCTGCGTTAACGTCTCCTTC 493
Query 297 AGTGGTAAGCTTCTTATGCAGAGCGATTTAGATGTTATGGCGGGGAAATTCGATCGACAT 356
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 494 AGTGGTAAGCTTCTGATGCAAAGCGATTTAGATGTTATGGCGGGGAAATTCGATGGACAT 553
Query 357 ACGAGGAATCTATCTCGGATTTACTCTGCTGGGATTCTAAGTCATGGATTTGCGATCGTT 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 554 ACGAGGAATCTATCTCGGATTTACTCAGCTGGGATTCTAAGTCATGGATTTGCGATCGTT 613
Query 417 GTGTTGAAGCCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTGTTGAAGCCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTG 673
Query 477 TTAACGAGGATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTTAAT 536
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 674 TTAACGAGAATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTGAAT 733
Query 537 GAAGCTATGGAAGAAGATGATAGATATGTTAAGATTGTGATTGAGATTAGTGATATGGTT 596
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 734 GAAGCTATGGAGGAAGATGATAGATATGTTAAGATTCTGATTGAGATTAGTGATATGGTT 793
Query 597 AATGTTCTTGTTGGGTTTCTTGATTCTGAGATGGGGGTTCAAGAAGAATCTGCGAAAGCT 656
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 794 AATGTTCTTGTTGGGTTTCTTGATTCTGAGATTGGGATTCAAGAAGAATCTGCCAAAGCT 853
Query 657 GTGTTTTTTATATCTGGGTTTGGTTCTTATAGGGGTGTTTTGATCAGATCAGGTGTCATT 716
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 854 GTGTTTTTTATATCTGGGTTTGGTTCTTATAGGGATGTTTTGATCAGATCAGGTGTGATT 913
Query 717 GGTCCTTTGGTTAGGGTTCTTGAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGTCCTTTGGTTAGGGTTCTTGAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGG 973
Query 777 TGTTTGATGAAATTAACGGAGAATTCGGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGT 836
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 974 TGTTTGATGAAATTAACTGAGAATTCTGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGT 1033
Query 837 GTTTCAGCATTGTTGAAGATATGTTCTTGTAGTGATTTTGGAGGTGAATTGATTGGTACT 896
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1034 GTTTCAGCTTTGTTGAAGATTTGTTCTTGTAGTGATTTTGGTGGTGAATTGATTGGTACT 1093
Query 897 TCGTGTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTATATGATTGAA 956
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1094 TCGTGTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTTTATGATTGAA 1153
Query 957 GAAGATGATACTGTAGCGAATTTCATCAAGCTTATTGGATCAAAGGAAGAGATTGTTCAG 1016
|||||| ||||||| || | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1154 GAAGATCATACTGTTGCTACTTTCATCAAGCTTATTGGATCAAAGGAGGAGATTGTTCAG 1213
Query 1017 GTAAATTCCATTGATTTACTGTTGAGTATGTGTTGTAAAGATGAACAAACTCGGGAAATC 1076
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1214 GTAAATTCTATTGATTTACTGTTGAGTATGTGTTGTAAAGACGAACAAACCCGGGACATC 1273
Query 1077 TTGGTTAGGGAAGGAGGAATTCAGGAGCTGGTGAGTGTATTATCAGATCCCAATTCGTTG 1136
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1274 TTGGTTAGAGAAGGAGGAATTCAGGAGCTAGTGAGTGTGTTATCAGATCCCAATTCGTTG 1333
Query 1137 TCCTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTTGGATCT 1196
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1334 TCTTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTCGGGTCT 1393
Query 1197 GCGGGTTGTTTGAATGCATTGATGAGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTA 1256
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1394 GCGGGTTGTTTGAATGCATTGATGGGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTA 1453
Query 1257 AGAAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTGTGTAGT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1454 AGAAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTATGTAGT 1513
Query 1317 TTACAAGAAGAAATTAAGAGGATAATGGGAGATGCGGGTTTTATGCCTGAGCTAGTTAAA 1376
||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1514 TTACAAGAAGAGGTTAAGAGGATAATGGGAGAGGCGGGTTTTATGCCCGAGCTAGTTAAA 1573
Query 1377 TTTCTTGACGCCAAATCGTTAGATGT-CAGAGAAATGGCGAGTGTGGCGCTCTACTGTTT 1435
||||| |||||||||||| ||||||| | ||||||||||||| ||||| || ||||||||
Sbjct 1574 TTTCTCGACGCCAAATCGATAGATGTAC-GAGAAATGGCGAGCGTGGCACTGTACTGTTT 1632
Query 1436 GATCTCGGTTCCAAGGAACAGAAAGAAGTTTGCGCAAGATGACTTTAACATAAGCTACAT 1495
||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1633 GATCTCGGTTCCAAGGAACAGGAAGAAGTTTGCACAAGACGACTTTAACATTAGCTACAT 1692
Query 1496 TCTCCAGTTGCTAGACCATGAAGATGGGAGCAATGTGAGCAGCGATTCAGGTAACACTAA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1693 TCTCCAGTTGCTAGACCATGAAGATGGGAGCAATGTGAGCAGCGATTCAGGTAACACAAA 1752
Query 1556 GTTTTTGATATCGATATTGATGTCTTTAACAAGCTGCAATAGCGCGAGAAGAAAGATTGC 1615
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1753 GTTTTTGATATCGATATTGATGTCTTTAACGAGCTGCAATAGCGCGAGAAGAAAGATTGC 1812
Query 1616 GACTTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATGCTAA 1675
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 GAGTTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATGCTAA 1872
Query 1676 GAAACTTGTGAAGAAGCTATCTAGGAACAGATTCCGCAGCATACTCAGTGGTATTTGGCA 1735
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1873 GAAACTTGTGAAGAAGCTATCAATGAACAGATTCCGCAGCATACTCAGTGGTATTTGGCA 1932
Query 1736 TTCCTAATTTTATTTTGTTTTCTTATAG 1763
|||||||||||||||||||| |||||||
Sbjct 1933 TTCCTAATTTTATTTTGTTTCCTTATAG 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87198346665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5